PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678325715

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

CO-like

Protein Properties

Length: 333aa MW: 36269 Da PI: 4.7664

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678325715	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	27	9.3e-09	54	95	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 ++C+ +e+++++ C+ + lC+ C +H+ H+ 678325715 54 VWICEVCEQEPATVTCKADAAALCAVCDRDIHSAnplarkHD 95 689*****************************6566666676 PP
2	CCT	62.7	1.1e-21	286	328	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R a++lRY+eKr++R+F+K++rY+sRKa+Ae+RpRvKGrF+k+ 678325715 286 RVARVLRYQEKRRNRNFKKTVRYASRKAYAETRPRVKGRFTKR 328 89***************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	0.29	10	47	IPR000315	B-box-type zinc finger
CDD	cd00021	3.70E-4	13	56	No hit	No description
PROSITE profile	PS50119	10.665	52	99	IPR000315	B-box-type zinc finger
SMART	SM00336	7.7E-15	52	99	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.5E-6	54	96	IPR000315	B-box-type zinc finger
CDD	cd00021	8.74E-8	55	99	No hit	No description
Pfam	PF06203	1.8E-16	286	328	IPR010402	CCT domain
PROSITE profile	PS51017	15.696	286	328	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MDSNSHGGES TARQCDYCRA ADAVVYCCNH SGFMCLPCDV RVHFADTGPR HGRVWICEVC 60 EQEPATVTCK ADAAALCAVC DRDIHSANPL ARKHDRYPMV QFFGSAEAEA AKLEASAALF 120 ANDDGGADDE DNVFDMDALE KKLDSWIPAD DTPGPATDNL DLKLIDFLFS EADKSIDFDN 180 FELPYDSRDS AIPLESTTLL DDAAASRIHA PEISFDMDFS NPSYSCYSQS ACNSFTTATL 240 SQSVSSSSVG VVNDGSSGSA SETSHPIAAA GNIPSGKQPN IVPNDRVARV LRYQEKRRNR 300 NFKKTVRYAS RKAYAETRPR VKGRFTKRGG DPE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678325715

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1035	23	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	4e-58	CONSTANS-like 5