PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678327226
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 210aa    MW: 23618.9 Da    PI: 9.9255
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678327226genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.94.2e-1987141256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ ++t++q++ Lee F+ + +++ +e++ LA+kl+L+ rqV vWFqNrRa+ k
  678327226  87 RKKLRLTRDQTTLLEESFRHQTTLNMAEKQALAEKLKLKPRQVEVWFQNRRARTK 141
                678899***********************************************98 PP
2HD-ZIP_I/II112.72.4e-3687177191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+++q +lLEesF+++++L+  +K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l een+rL++e ++Lr+ l
    678327226  87 RKKLRLTRDQTTLLEESFRHQTTLNMAEKQALAEKLKLKPRQVEVWFQNRRARTKLKQTEVDCEFLKKNCERLLEENRRLKEELSKLRKGL 177
                  69*************************************************************************************9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-1866144IPR009057Homeodomain-like
SuperFamilySSF466893.42E-1876144IPR009057Homeodomain-like
PROSITE profilePS5007116.81183143IPR001356Homeobox domain
SMARTSM003896.6E-1485147IPR001356Homeobox domain
PfamPF000462.2E-1687141IPR001356Homeobox domain
CDDcd000865.39E-1487144No hitNo description
PROSITE patternPS000270118141IPR017970Homeobox, conserved site
PfamPF021838.0E-9143175IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.1E-10143184IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MEVEEEKVAL GLGLGLGLGD YAAGRTPGAA KKRVLLVDLS FPLHKSSSDG TTSAEDSSQN  60
QDCKSSGFFG GKEEVDGSGG FLKEFGRKKL RLTRDQTTLL EESFRHQTTL NMAEKQALAE  120
KLKLKPRQVE VWFQNRRART KLKQTEVDCE FLKKNCERLL EENRRLKEEL SKLRKGLPEF  180
LRSPSVPDKT GKPEHRGGRE KQAVVPEHQP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135143RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678327226
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070186.15e-56homeobox-leucine zipper protein HOX17-like
SwissprotP466024e-36HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A022RC481e-53A0A022RC48_ERYGU; Uncharacterized protein
STRINGXP_009341742.11e-42(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.14e-25HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]