PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678329120
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family LBD
Protein Properties Length: 186aa    MW: 20637.7 Da    PI: 4.7657
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678329120genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260637.6e-20460156
     DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeered 56
               +CaaC+vlrr+Ca++C lapyfp ++p +fa +h++FGasn++k l+    ++  +d
  678329120  4 PCAACRVLRRRCADNCLLAPYFPLSDPLRFATAHRVFGASNIIKNLQCSgMPTMEHD 60
               7********************************************998633333555 PP
2DUF26059.87.9e-196812643101
     DUF260  43 lkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101
                l+ l++lpe++r da+ss+vyeA+ar+rdPvyG++g i++lq+q+++l+a+la+++++l
  678329120  68 LQCLQELPESQRADAVSSIVYEANARLRDPVYGSAGAIFQLQRQVSELQAQLAKAQAQL 126
                5789***************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.3463126IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-18462IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-1669123IPR004883Lateral organ boundaries, LOB
Gene3DG3DSA:1.20.58.609.3E-578139No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MVYPCAACRV LRRRCADNCL LAPYFPLSDP LRFATAHRVF GASNIIKNLQ CSGMPTMEHD  60
LMTCGIKLQC LQELPESQRA DAVSSIVYEA NARLRDPVYG SAGAIFQLQR QVSELQAQLA  120
KAQAQLDKLQ GEKDSLQAMI WGETVSPLIN FNTFDDISYC VMEYFNSGSC SLDENGIGVF  180
PLEQTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-33412611111LOB family transfactor Ramosa2.1
5ly0_B5e-33412611111LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678329120
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019227600.12e-55PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9SK087e-51LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A314KQ105e-54A0A314KQ10_NICAT; Lob domain-containing protein 1
STRINGERN049569e-54(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.19e-34LOB domain-containing protein 11