PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678329147
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 240aa    MW: 27020.9 Da    PI: 9.2677
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678329147genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd +l++ v+q+G+g +W + +++ g++R++k+c++rw++yl
        678329147 14 KGPWSSEEDAKLKQFVEQFGNGgNWISLPKKAGLRRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding28.73e-0970137346
                      SS-HHHHHHHHHHHHHTTTT.........................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg.........................tWktIartmgkgRtlkqcksrwqk 46 
                       ++ eEd ++  + +  G++                         +W+  a  ++ gRt++++k++w++
        678329147  70 GFSDEEDRIICALYAAIGSRsagitrtrihqtvnlftligtnvddRWSIMATQLP-GRTDNDIKNYWNT 137
                      58999999999999999999999999999999999999*****************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.57966IPR017930Myb domain
SMARTSM007171.2E-111364IPR001005SANT/Myb domain
PfamPF002494.7E-151462IPR001005SANT/Myb domain
SuperFamilySSF466891.08E-211466IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.1E-241569IPR009057Homeodomain-like
CDDcd001672.70E-91662No hitNo description
PROSITE profilePS500908.24663139IPR017877Myb-like domain
SMARTSM007172.4E-867141IPR001005SANT/Myb domain
PfamPF002491.5E-669137IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-2070144IPR009057Homeodomain-like
CDDcd001677.78E-5104137No hitNo description
SuperFamilySSF466891.08E-21111140IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSSE EDAKLKQFVE QFGNGGNWIS LPKKAGLRRC GKSCRLRWLN  60
YLRPNIKHGG FSDEEDRIIC ALYAAIGSRS AGITRTRIHQ TVNLFTLIGT NVDDRWSIMA  120
TQLPGRTDND IKNYWNTKLK KKLVMKMVTQ PSFLQSHRDI GTLLSFQIAR SESFPGLGSF  180
IFSNQSSPYQ GLHLPSEGFI SNGRYQQEMG CFQGILPDEN ACDLPLQAAE TDIWGMHYPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-20141437108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678329147
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090100.11e-72transcription factor RAX2-like
SwissprotQ9FKL22e-65MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A251VDY72e-70A0A251VDY7_HELAN; Putative homeodomain-like protein
STRINGXP_010684035.19e-70(Beta vulgaris)
STRINGPGSC0003DMT4000099269e-70(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.11e-62myb domain protein 68
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]