PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678329443

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

FAR1

Protein Properties

Length: 537aa MW: 60102.6 Da PI: 7.3822

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678329443	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.8	3.6e-23	65	153	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 Y++YA+ vGF+vr+ k+++ ++++ ++t++Cskeg ++e+ ++ + + +r+etrtgC+a++ + +++g w+v++++ HnHe+ap 678329443 65 LYCDYARAVGFNVRRGKQYYFMGTKRVRSKTYCCSKEGAKDEKADT-CSLSYKRPETRTGCRAMISFSCDDSGLWKVSRFSRAHNHEMAP 153 69*************************************99988.99999*********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-19	65	153	IPR004330	FAR1 DNA binding domain
Pfam	PF04367	6.5E-30	377	477	IPR007462	Protein of unknown function DUF502

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010222	Biological Process	stem vascular tissue pattern formation
GO:0005794	Cellular Component	Golgi apparatus

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence Send to blast
MESSGLDLEN QEALCGESDE DGGLNPRSGG EVVDVNGVQD DAHILHLEKR LLKKPVYSEE 60 EAYMLYCDYA RAVGFNVRRG KQYYFMGTKR VRSKTYCCSK EGAKDEKADT CSLSYKRPET 120 RTGCRAMISF SCDDSGLWKV SRFSRAHNHE MAPPYANPSV KSGQAILAAN VYGNGGSLES 180 LSEHEKIREL SIQLALAKNR AETFEKQAAA YKRQLHLIVD HIEEHNQFLS KRIQKVLGNR 240 FGVVRKTLIE FCSVEILEWE VVLLKKNLRV SMASTSGERD LELLIPVAEH RHGESDSVSD 300 SSKPSISASS QQNSGSETFY KLVRSWASKK FMTGCVILFP IAITFYITWW FIHFVDGFFS 360 PLYAQLGVDV FGVGFITSIT FIFLVGVFMS SWLGASLLSL GEWFIKRMPF VRHIYNASKQ 420 ISSAISPDQN TKAFKEVAII RHPRVGEYAF GFITSSLSLQ TNLGDEDLCC VYVPTNHLYI 480 GDIFLVNAKD VIRPNLSVRE GIEIVVSGGM SMPQILTTLH PTTILADDGI RSNTSRH

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence Send to blast

MESSGLDLEN QEALCGESDE DGGLNPRSGG EVVDVNGVQD DAHILHLEKR LLKKPVYSEE  60
EAYMLYCDYA RAVGFNVRRG KQYYFMGTKR VRSKTYCCSK EGAKDEKADT CSLSYKRPET  120
RTGCRAMISF SCDDSGLWKV SRFSRAHNHE MAPPYANPSV KSGQAILAAN VYGNGGSLES  180
LSEHEKIREL SIQLALAKNR AETFEKQAAA YKRQLHLIVD HIEEHNQFLS KRIQKVLGNR  240
FGVVRKTLIE FCSVEILEWE VVLLKKNLRV SMASTSGERD LELLIPVAEH RHGESDSVSD  300
SSKPSISASS QQNSGSETFY KLVRSWASKK FMTGCVILFP IAITFYITWW FIHFVDGFFS  360
PLYAQLGVDV FGVGFITSIT FIFLVGVFMS SWLGASLLSL GEWFIKRMPF VRHIYNASKQ  420
ISSAISPDQN TKAFKEVAII RHPRVGEYAF GFITSSLSLQ TNLGDEDLCC VYVPTNHLYI  480
GDIFLVNAKD VIRPNLSVRE GIEIVVSGGM SMPQILTTLH PTTILADDGI RSNTSRH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678329443

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	XP_008462683.1	1e-142	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	5e-22	FAR1 family protein