PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678330169
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WOX
Protein Properties Length: 198aa    MW: 22822.1 Da    PI: 10.1642
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678330169genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.39.6e-2269128357
                --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                +R+++t+eq+ +Le+l++   r+p+ae++e++A++l    +++ ++V++WFqN++a+e++
  678330169  69 TRWNPTHEQIGILERLYHGgMRTPTAEQIEHIARELskygRIEGKNVFYWFQNHKARERQ 128
                7*****************99**************************************97 PP
2Wus_type_Homeobox115.52.6e-3768129364
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                         tRW+Pt+eQi iLe+ly+ G+rtP++e+i++i++eL++yG+ie+kNVfyWFQN+kaRerqk
          678330169  68 GTRWNPTHEQIGILERLYHGGMRTPTAEQIEHIARELSKYGRIEGKNVFYWFQNHKARERQK 129
                        58***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.45E-1464133IPR009057Homeodomain-like
PROSITE profilePS5007111.12764129IPR001356Homeobox domain
SMARTSM003896.1E-866133IPR001356Homeobox domain
PfamPF000462.5E-1969128IPR001356Homeobox domain
CDDcd000861.28E-569129No hitNo description
Gene3DG3DSA:1.10.10.602.1E-970128IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MLPIEVEAMK LGRLWEHEPP AALPLGVGCK RLRRLATAGD MKSFIRKGAA QGKGEVTSLP  60
NKEPPQGGTR WNPTHEQIGI LERLYHGGMR TPTAEQIEHI ARELSKYGRI EGKNVFYWFQ  120
NHKARERQKL KQKLQHDVGN FTKEEAEANL SKRKCEPQEF MKHSSKSAPH LEEDEDQRRT  180
LQLFPLNPER RIKTLSEI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678330169
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466614.12e-46PREDICTED: WUSCHEL-related homeobox 4-like
SwissprotQ6X7J94e-35WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBLA0A2G9I8S01e-45A0A2G9I8S0_9LAMI; Uncharacterized protein
STRINGGorai.002G134800.18e-46(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61862335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.12e-37WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  3. Guo X, et al.
    Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
    PLoS Pathog., 2017. 13(2): p. e1006142
    [PMID:28158306]
  4. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  5. Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
    WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
    New Phytol., 2017. 215(2): p. 642-657
    [PMID:28609015]
  6. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]