PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678330978
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 250aa    MW: 28670.8 Da    PI: 9.0001
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678330978genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00097934123
               EEET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2  1 ykCp..dCgksFsrksnLkrHirt.H 23
               ++Cp   C+ +F+ + n++rH +  H
  678330978  9 FECPveSCKSRFTVRGNMTRHAKEfH 34
               89*******************99888 PP
2zf-C2H220.71.1e-064872123
               EEET..TTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCp..dCgksFsrksnLkrHirtH 23
               y+C+   Cgk+F+++s L++H  +H
  678330978 48 YRCEedGCGKVFPHPSRLRKHAGSH 72
               99*******************7666 PP
3zf-C2H2171.7e-05140163323
                ET..TTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   3 Cp..dCgksFsrksnLkrHirt.H 23 
                C+   C+ +Fs+ snLk+H +  H
  678330978 140 CTyeGCPLTFSTASNLKQHVKAvH 163
                88889**************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-4731IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.62E-5735No hitNo description
SMARTSM003550.34934IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.452939IPR007087Zinc finger, C2H2
PROSITE patternPS0002801134IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.9E-84672IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.724872IPR007087Zinc finger, C2H2
SMARTSM003552.9E-44872IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.36E-54872No hitNo description
PROSITE patternPS0002805072IPR007087Zinc finger, C2H2
SMARTSM003551.480105IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028082105IPR007087Zinc finger, C2H2
SMARTSM0035514108129IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.1E-8119160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.41E-8119175No hitNo description
SMARTSM003550.0025138163IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.887138168IPR007087Zinc finger, C2H2
PROSITE patternPS000280140163IPR007087Zinc finger, C2H2
SMARTSM0035543169195IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280171195IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MLLHEGKLFE CPVESCKSRF TVRGNMTRHA KEFHDESTSA SVQGPTVYRC EEDGCGKVFP  60
HPSRLRKHAG SHVKLDCVEA LCTEPGCMKY FTNEKCLKEH ISASHQYISC KECGSKQLKK  120
NIKRHMRKHE SGTPHERVSC TYEGCPLTFS TASNLKQHVK AVHMELKPYN CCMPGCYMRF  180
AFKHVRDNHE RSGIHVYTPG DFQEWDQQFR SRPRGGRKRK YPPFIETLLP ARKRVAPPSE  240
SDLQESGLPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211219RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678330978
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079244.11e-123transcription factor IIIA
SwissprotQ84MZ42e-84TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2G9HUD01e-122A0A2G9HUD0_9LAMI; Uncharacterized protein
STRINGMigut.K00168.1.p1e-118(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36442447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.12e-79transcription factor IIIA