PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678331074

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

CO-like

Protein Properties

Length: 349aa MW: 38097.1 Da PI: 5.1439

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678331074	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.6	5.4e-08	60	95	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.H 37 ++C+ +e++++ C+ + lC C +H+ H 678331074 60 VWICEVCEQEPAAVTCKADAAALCVACDRDIHSAnH 95 689*****************************6574 PP
2	CCT	62.1	1.8e-21	294	336	1	43
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R a++lRY+eKr++R+F+K++rY+sRKa+Ae+RpRvKGrF k+ 678331074 294 RVARVLRYQEKRRNRNFKKTVRYASRKAYAETRPRVKGRFMKR 336 89**************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	0.24	16	53	IPR000315	B-box-type zinc finger
CDD	cd00021	7.34E-4	20	62	No hit	No description
SMART	SM00336	7.8E-14	58	105	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.779	58	105	IPR000315	B-box-type zinc finger
Pfam	PF00643	4.5E-6	60	101	IPR000315	B-box-type zinc finger
CDD	cd00021	1.28E-7	61	98	No hit	No description
Pfam	PF06203	2.5E-16	294	336	IPR010402	CCT domain
PROSITE profile	PS51017	15.666	294	336	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MEISDGGDLA AAGGESTAKP CDYCSSADAV VYCCKHSAFM CLSCDVRIHF ADTGARHGRV 60 WICEVCEQEP AAVTCKADAA ALCVACDRDI HSANHVARKH ERYPMVQFFG SAEAEAAKLE 120 ASTALFADDD QSAFNMDILE TKLDSWPPAD DTPEPATGDL DLKLIDFLFS EADRSTDFHN 180 FQLPYDSIDS VIPIESTTLL EEEEEEEEAA ASSHIHAPEV SFHIDFSKTN YSCHSQSACS 240 SFTSTTLSQS VSSSSAGVIT DGSSSEVSHP FPATGNISSV NAQGKQPHIV PNDRVARVLR 300 YQEKRRNRNF KKTVRYASRK AYAETRPRVK GRFMKRGGDA EHHPAAAKQ

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MEISDGGDLA AAGGESTAKP CDYCSSADAV VYCCKHSAFM CLSCDVRIHF ADTGARHGRV  60
WICEVCEQEP AAVTCKADAA ALCVACDRDI HSANHVARKH ERYPMVQFFG SAEAEAAKLE  120
ASTALFADDD QSAFNMDILE TKLDSWPPAD DTPEPATGDL DLKLIDFLFS EADRSTDFHN  180
FQLPYDSIDS VIPIESTTLL EEEEEEEEAA ASSHIHAPEV SFHIDFSKTN YSCHSQSACS  240
SFTSTTLSQS VSSSSAGVIT DGSSSEVSHP FPATGNISSV NAQGKQPHIV PNDRVARVLR  300
YQEKRRNRNF KKTVRYASRK AYAETRPRVK GRFMKRGGDA EHHPAAAKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678331074

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1035	23	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	8e-58	CONSTANS-like 5