PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678331508
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 198aa    MW: 22978.2 Da    PI: 9.2846
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678331508genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.52.7e-1950104256
                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                rk+ ++++eq+  Lee F+++++++  +++ LA+kl+L++rqV vWFqNrRa+ k
  678331508  50 RKKLKLSSEQTMLLEESFKQHSTLTMVQKKALAEKLNLKQRQVEVWFQNRRARTK 104
                678899***********************************************98 PP
2HD-ZIP_I/II108.16.2e-3550140191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk++ls+eq  lLEesF+++++L+  +K++la++L+l++rqv+vWFqnrRARtk+kq+E++++aL++++++l+een+rL++e  eLr+ l
    678331508  50 RKKLKLSSEQTMLLEESFKQHSTLTMVQKKALAEKLNLKQRQVEVWFQNRRARTKLKQTEMECKALRKSCERLMEENRRLSRELLELRSGL 140
                  69*************************************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.92546106IPR001356Homeobox domain
SuperFamilySSF466894.71E-1847115IPR009057Homeodomain-like
SMARTSM003896.9E-1648110IPR001356Homeobox domain
CDDcd000864.26E-1450107No hitNo description
PfamPF000461.9E-1650104IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-1850112IPR009057Homeodomain-like
PROSITE patternPS00027081104IPR017970Homeobox, conserved site
SMARTSM003403.9E-10106150IPR003106Leucine zipper, homeobox-associated
PfamPF021835.3E-7106139IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MPCSDSDDDL VCDTDLRLRP YTTTDSLDRS ELKNGRKQDR CEEDENLSGR KKLKLSSEQT  60
MLLEESFKQH STLTMVQKKA LAEKLNLKQR QVEVWFQNRR ARTKLKQTEM ECKALRKSCE  120
RLMEENRRLS RELLELRSGL RPEAPPYVYH FHKVAGKLTP PPSRDNISIS FDQGGVSGSM  180
EALHTSQLIT HRRRMAGE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198106RRARTKLKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap678331508
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022886873.11e-40homeobox-leucine zipper protein HAT22-like
RefseqXP_022886874.12e-40homeobox-leucine zipper protein HAT22-like
TrEMBLA0A1Q3AVR83e-38A0A1Q3AVR8_CEPFO; Homeobox domain-containing protein/HALZ domain-containing protein
TrEMBLA0A4D9BMB11e-38A0A4D9BMB1_SALSN; Homeobox-leucine zipper protein
STRINGXP_008801538.11e-38(Phoenix dactylifera)
STRINGSi014954m4e-38(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.16e-30HD-ZIP family protein