PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678331548

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

M-type_MADS

Protein Properties

Length: 1279aa MW: 144563 Da PI: 6.2329

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678331548	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	62.3	5.5e-20	100	150	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+++ qvtfskRr g++ KA EL LCd +v vi+fs +gklye +s 678331548 100 KKIDSTAEGQVTFSKRRRGLFRKADELALLCDSDVGVIVFSDSGKLYEHAS 150 6899********************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.06E-22	92	160	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.2E-27	92	151	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.651	92	152	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.59E-28	93	168	No hit	No description
PRINTS	PR00404	1.1E-18	94	114	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.1E-19	101	147	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-18	114	129	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-18	129	150	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51774	24.279	352	437	IPR011684	Protein Networked (NET), actin-binding (NAB) domain
Pfam	PF07765	1.1E-18	380	431	IPR011684	Protein Networked (NET), actin-binding (NAB) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding
GO:0003779	Molecular Function	actin binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1279 aa Download sequence Send to blast
MRAPTPKSCS SVPSLSQRAK DEANEQDGNT TIEFHIVEKI EKHSSSSSPL VSGLFSCFSG 60 RVLVIFHFWC FLFLCSSGSD SKPFWKKGHI PMARERIPIK KIDSTAEGQV TFSKRRRGLF 120 RKADELALLC DSDVGVIVFS DSGKLYEHAS SSMKEILERR DLHFQNLSPN GQPSQLAEGS 180 SSSRLTRELA DKSHGIRRGA TRIKHSGAAA TRDFNPSRIK ACHSEEGGEN HERDQAVARK 240 GKATHGGEPK AEPTGGGYVE PWKRHGRRGV DGHDLRRRPV VGVCELQLQW RPSPGSRYLR 300 YRLPPLNSGA CSLVHEGKRR RPCELPALYQ LTEWGCGTEE VTGAVLCSRV AGSVEVADSF 360 YRRGAVGMRL FPRLIGRRYM EEKMHSTIKL IDEDGDSFAK RAEMYYKRRP EIINAIEESY 420 RSFKALADRY DMLSKELQNA NHTIATVFPE QVQFTMDEED DCEVQKAFKN APILPVNPGP 480 NIPNVPKVPI QNLQGLVHTA SRKLKAKENV PKPLPRAKAA AALGLSKEDA FGEIEKLNKE 540 ILVLQTIKEF VKSSYESGLA KYWEIENQIM EKQDKVCKLQ DEFEVDTVIE DSEARTLMAE 600 AALKSCQETL AALQEKQENA TREAREEYKK VEQARELLSS LKNKYLKDQL DERMGSGSDN 660 SEGGSGLIHQ SKEDEIPQND NVGKDSEFQS LTVTELAEKI DELVIKVINL ETAVSSQTAL 720 IDTLRTEADD LHSQIKNLED EKENLIGDAQ NLSIRVTELE EKLSRIQNLN KNVESQGNNL 780 HANFSQALSS LDQLSGKLGG VRPDEDAEAE LQEGIKYNND VDTSNTIQNV LKVEPSVTQE 840 VQEVDVQVEP QHEVKQQVKK TVTFVDEKPM ETIITDNSTS DDVKQQVKKT VTLVDEKPMD 900 TVVVGSNANE LGNGEAKEEN VKEVDDVSWQ QMLLSGTEDR EKILLKEYTA ILRNYKDVKK 960 KLNDSEKKDK DMHFDMMVQM KELKETILKR DRQIQHLQQK LNHAQVTDNE GGLLLNSPRD 1020 ENMEAESKND YREDDIKLIY IDGSAKKSPV EEKLRGDINV ILDENLDFWL RFSTSYHEVQ 1080 KFKSEVRDLQ DEISKLGEKK KQEGSDANQL KSEARPIYKH LREIQTELTI WLERTASLKD 1140 ELKRRFSSIC SIQEEITRTL AEGVEEGLAS HQAAKLHGEI LNMKQEQDKV REELQSCFDQ 1200 VGELQLKIEK TVTQMNEDFA ITTDQPQLKH SMSRAKVPLR SFIFGTKPKK QKHSLFSFIH 1260 QNRKAPAMRA AITHSNGSS

Sequence ? help Back to Top

Protein Sequence Length: 1279 aa Download sequence Send to blast

MRAPTPKSCS SVPSLSQRAK DEANEQDGNT TIEFHIVEKI EKHSSSSSPL VSGLFSCFSG  60
RVLVIFHFWC FLFLCSSGSD SKPFWKKGHI PMARERIPIK KIDSTAEGQV TFSKRRRGLF  120
RKADELALLC DSDVGVIVFS DSGKLYEHAS SSMKEILERR DLHFQNLSPN GQPSQLAEGS  180
SSSRLTRELA DKSHGIRRGA TRIKHSGAAA TRDFNPSRIK ACHSEEGGEN HERDQAVARK  240
GKATHGGEPK AEPTGGGYVE PWKRHGRRGV DGHDLRRRPV VGVCELQLQW RPSPGSRYLR  300
YRLPPLNSGA CSLVHEGKRR RPCELPALYQ LTEWGCGTEE VTGAVLCSRV AGSVEVADSF  360
YRRGAVGMRL FPRLIGRRYM EEKMHSTIKL IDEDGDSFAK RAEMYYKRRP EIINAIEESY  420
RSFKALADRY DMLSKELQNA NHTIATVFPE QVQFTMDEED DCEVQKAFKN APILPVNPGP  480
NIPNVPKVPI QNLQGLVHTA SRKLKAKENV PKPLPRAKAA AALGLSKEDA FGEIEKLNKE  540
ILVLQTIKEF VKSSYESGLA KYWEIENQIM EKQDKVCKLQ DEFEVDTVIE DSEARTLMAE  600
AALKSCQETL AALQEKQENA TREAREEYKK VEQARELLSS LKNKYLKDQL DERMGSGSDN  660
SEGGSGLIHQ SKEDEIPQND NVGKDSEFQS LTVTELAEKI DELVIKVINL ETAVSSQTAL  720
IDTLRTEADD LHSQIKNLED EKENLIGDAQ NLSIRVTELE EKLSRIQNLN KNVESQGNNL  780
HANFSQALSS LDQLSGKLGG VRPDEDAEAE LQEGIKYNND VDTSNTIQNV LKVEPSVTQE  840
VQEVDVQVEP QHEVKQQVKK TVTFVDEKPM ETIITDNSTS DDVKQQVKKT VTLVDEKPMD  900
TVVVGSNANE LGNGEAKEEN VKEVDDVSWQ QMLLSGTEDR EKILLKEYTA ILRNYKDVKK  960
KLNDSEKKDK DMHFDMMVQM KELKETILKR DRQIQHLQQK LNHAQVTDNE GGLLLNSPRD  1020
ENMEAESKND YREDDIKLIY IDGSAKKSPV EEKLRGDINV ILDENLDFWL RFSTSYHEVQ  1080
KFKSEVRDLQ DEISKLGEKK KQEGSDANQL KSEARPIYKH LREIQTELTI WLERTASLKD  1140
ELKRRFSSIC SIQEEITRTL AEGVEEGLAS HQAAKLHGEI LNMKQEQDKV REELQSCFDQ  1200
VGELQLKIEK TVTQMNEDFA ITTDQPQLKH SMSRAKVPLR SFIFGTKPKK QKHSLFSFIH  1260
QNRKAPAMRA AITHSNGSS

Functional Description ? help Back to Top
Source	Description
UniProt	Probably involved in the receptor-like kinase-mediated signal transduction pathway. {ECO:0000305\|PubMed:11500547}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678331548

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012835126.1	0.0	PREDICTED: kinase-interacting protein 1
Swissprot	Q94CG5	0.0	KIP1_PETIN; Kinase-interacting protein 1
TrEMBL	S8EBI4	0.0	S8EBI4_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.K00800.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	1e-35	MIKC_MADS family protein

Publications ? help Back to Top
Skirpan AL, et al. Isolation and characterization of kinase interacting protein 1, a pollen protein that interacts with the kinase domain of PRK1, a receptor-like kinase of petunia. Plant Physiol., 2001. 126(4): p. 1480-92 [PMID:11500547] Deeks MJ, et al. A superfamily of actin-binding proteins at the actin-membrane nexus of higher plants. Curr. Biol., 2012. 22(17): p. 1595-600 [PMID:22840520]