PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678333077
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 127aa    MW: 15135.2 Da    PI: 9.552
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678333077genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox391.3e-1212412756
               HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox 27 aeereeLAkklgLterqVkvWFqNrRakek 56
               +++++eLA+ l+L  rqV vWFqNrRa+ k
  678333077 12 QRQKQELARDLKLRPRQVEVWFQNRRARTK 41
               6799************************98 PP
2HD-ZIP_I/II82.94.8e-2711742588
  HD-ZIP_I/II 25 eperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88
                 ++++K+elar+L+l+prqv+vWFqnrRARtk+kq+E+ ye+Lk+ + +l+een+ L+ke + Lr
    678333077 11 DQRQKQELARDLKLRPRQVEVWFQNRRARTKLKQTETHYEYLKQYCATLTEENRWLHKELQILR 74
                 5789********************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.795143IPR001356Homeobox domain
CDDcd000862.31E-71144No hitNo description
Gene3DG3DSA:1.10.10.601.0E-111149IPR009057Homeodomain-like
SuperFamilySSF466895.56E-111152IPR009057Homeodomain-like
PfamPF000464.6E-101241IPR001356Homeobox domain
PROSITE patternPS0002701841IPR017970Homeobox, conserved site
SMARTSM003402.5E-114386IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MKGIEVRGFS DQRQKQELAR DLKLRPRQVE VWFQNRRART KLKQTETHYE YLKQYCATLT  60
EENRWLHKEL QILRMPQQQQ QPVYMCPCCQ RIAFAPKDKD NDGDQPGDPA NATTLFNIPL  120
KHPQHSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13543RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678333077
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022884327.12e-30homeobox-leucine zipper protein HAT22-like
SwissprotA2YW033e-26HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
TrEMBLS8BXA11e-30S8BXA1_9LAMI; Uncharacterized protein (Fragment)
STRINGLus100210641e-29(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-25HD-ZIP family protein