PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678333300
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HSF
Protein Properties Length: 243aa    MW: 27594.8 Da    PI: 5.5252
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678333300genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.13.9e-35101022103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k++++++d++++e++sw+e+g+ fvv+++ efak++LpkyFkh+nf+SFvRQLn+YgF+k  +++         weF+++sFk+g+ +ll++i+
     678333300  10 FLIKTFQLVDDQATDEVVSWNETGTGFVVWKTAEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKAASDK---------WEFSNDSFKRGHLDLLREIR 97 
                   9***************************************************************9999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
     678333300  98 RRKTT 102
                   **975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.98E-33599IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.0E-56699IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-36699IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.7E-311099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-201033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-204860IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-206173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MVARSSPAPF LIKTFQLVDD QATDEVVSWN ETGTGFVVWK TAEFAKDLLP KYFKHNNFSS  60
FVRQLNTYGF RKAASDKWEF SNDSFKRGHL DLLREIRRRK TTAGRNPAAA DNVSSGDDLA  120
SSSTSSPVSK TPDLSSENDQ LRKDNQMLAL ELAETKRRFD DLVAFVTRFV NVDRDEINRV  180
LDAEEQRCVK LFGVVVKRKR EDSFEKKDFC GAGDGGEEIF KVDEPWREIP GFRGETDTSN  240
VCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-24110311124Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678333300
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099137.13e-82heat shock factor protein HSF24
SwissprotP223351e-76HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A2G9GXX12e-83A0A2G9GXX1_9LAMI; Uncharacterized protein
STRINGEOX914073e-76(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99912127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.11e-63heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]