PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678333437

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

SRS

Protein Properties

Length: 196aa MW: 22068.9 Da PI: 9.3376

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678333437	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	133	3.1e-41	74	192	4	150
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelets 103 ++++CqdCGnqakkdC+h+RCRtCC++rgf+C thvkstWvpaakrrer++ql+ + + + rkr+ +++e e 678333437 74 TKINCQDCGNQAKKDCVHMRCRTCCRNRGFQCPTHVKSTWVPAAKRRERHEQLQRRDPTP------EVATRKRQR----------------ANPSEPENG 151 6789*******************************************88887643322......222222221................223344567 PP DUF702 104 slPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydq 150 ++P+ev ++a fr+vrv+ +e+aY+++v igGhvfkG++++q 678333437 152 RFPSEVTATAAFRSVRVR------DEYAYEAVVRIGGHVFKGTIFHQ 192 8***********96......8***************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.4E-41	75	192	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.4E-26	77	119	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.1E-12	152	192	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MAAGFFALGG VGDVAGGGAA MAPEMNLESW LLYRNEANDL PYKGFEPWGR QPMGVSFDRR 60 QSPVLEPYKL GDETKINCQD CGNQAKKDCV HMRCRTCCRN RGFQCPTHVK STWVPAAKRR 120 ERHEQLQRRD PTPEVATRKR QRANPSEPEN GRFPSEVTAT AAFRSVRVRD EYAYEAVVRI 180 GGHVFKGTIF HQHTAS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678333437

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016571710.1	3e-48	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	2e-40	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A2G2ZMH9	2e-47	A0A2G2ZMH9_CAPAN; Uncharacterized protein
TrEMBL	A0A2P5VYP1	2e-47	A0A2P5VYP1_GOSBA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	3e-42	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]