PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678334233
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 314aa    MW: 33553.1 Da    PI: 6.1193
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678334233genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00088287310123
                EEETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                ++C+ C++ F++   L++H +  H
  678334233 287 HTCNSCKRNFNSDKALESHNKAkH 310
                79*****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.762287314IPR007087Zinc finger, C2H2
PROSITE patternPS000280289310IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MPGPPFPGGL PCPAPGPGLN QVWLLDSAYG RGKSGVEVKS GEPLKVTPGF GRVLHLSQAC  60
LGEVKKEKSG ESVYLSVNVD GSKLGLGTLF ADKLPQQQFD LVFDRDFEIS HNWKSGSVYF  120
YGYIADNILD DEYPLRHESD SDSEDDKPNV VADNGKPALK PTPQESLGTG KANSLKDKKS  180
GNSKVGDEIS DGDSMSEDDD DDENDDEDSS ESDEETPKKV VPSKKRAAEP ASKTPVQGKK  240
AKLVTPQKTD SKKAGVHVAT PHPAKQTGKK APGEKPDQVG QKSAGAHTCN SCKRNFNSDK  300
ALESHNKAKH SAGK
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678334233
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101488.12e-92histone deacetylase HDT1
SwissprotQ6V9I63e-76HDT1_SOLCH; Histone deacetylase HDT1
TrEMBLA0A0V0HRY44e-82A0A0V0HRY4_SOLCH; Putative histone deacetylase HDT1-like
TrEMBLA0A2G9G0305e-82A0A2G9G030_9LAMI; Histone deacetylase
TrEMBLM1AFH04e-82M1AFH0_SOLTU; Uncharacterized protein
STRINGMigut.L01752.1.p2e-86(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31761823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-27histone deacetylase 3
Publications ? help Back to Top
  1. Lagacé M,Chantha SC,Major G,Matton DP
    Fertilization induces strong accumulation of a histone deacetylase (HD2) and of other chromatin-remodeling proteins in restricted areas of the ovules.
    Plant Mol. Biol., 2003. 53(6): p. 759-69
    [PMID:15082924]