PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678334583
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 237aa    MW: 26967.5 Da    PI: 6.7937
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678334583genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-1972124456
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                + ++++eqle Le+ F+++ +++ +++ +LAk+lg++ rq+ vWFqNrRa++k
  678334583  72 KKRLSTEQLESLENSFQEEIKLDPDRKMKLAKELGMQPRQIAVWFQNRRARWK 124
                45699***********************************************9 PP
2HD-ZIP_I/II118.63.4e-3871161292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  kk+rls+eq+++LE+sF+ee kL+p+rK++la+eLg+qprq+avWFqnrRAR+k+kqlE+ y+aLk+++da+++e+++L++ev +Lr+ lk
    678334583  71 KKKRLSTEQLESLENSFQEEIKLDPDRKMKLAKELGMQPRQIAVWFQNRRARWKAKQLENLYDALKQELDAVTREKQKLQQEVMALRALLK 161
                  9**************************************************************************************8877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-1956128IPR009057Homeodomain-like
PROSITE profilePS5007116.7366126IPR001356Homeobox domain
SMARTSM003894.5E-1768130IPR001356Homeobox domain
CDDcd000864.37E-1771127No hitNo description
PfamPF000469.5E-1772124IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.6E-2173133IPR009057Homeodomain-like
PRINTSPR000311.5E-597106IPR000047Helix-turn-helix motif
PROSITE patternPS000270101124IPR017970Homeobox, conserved site
PRINTSPR000311.5E-5106122IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MASMDWNNEG YRLPGFGMRP ESSFSFLYNY TYDHQFPGLE MKQPSLSATQ MLPSLTGKGN  60
GCMNIYGQDL KKKRLSTEQL ESLENSFQEE IKLDPDRKMK LAKELGMQPR QIAVWFQNRR  120
ARWKAKQLEN LYDALKQELD AVTREKQKLQ QEVMALRALL KDQTGKKQIS PGVSGEETVE  180
STSILSSDAP PVTNNGSNVH QISECNGTNN NSSNYLMHVD DYSNPAMMTP YNWPALL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118126RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678334583
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094442.11e-104putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR01e-51ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLS8CB321e-106S8CB32_9LAMI; Uncharacterized protein
STRINGMigut.J00491.1.p4e-92(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38692246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.15e-54homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]