PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678334627
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NAC
Protein Properties Length: 225aa    MW: 25712.9 Da    PI: 8.4281
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678334627genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM127.51.1e-3971352128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                p+GfrF P++eel+++yL++k+ g+   +++++i+ ++iy+++P dLp ++   + ++w+fF++ + k+a++ r+nr t +gyWkatg++ +v s++++ 
  678334627   7 PVGFRFYPNEEELLSFYLHRKIYGNCpPSIDSIIPLLHIYDYDPPDLPrNHSPLGGEQWFFFVPMRGKEARNGRTNRLTPQGYWKATGTQSDVNSSQHQI 106
                89********************99984556667999************555566999******************************************* PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                +g k+t+vfy grap+g+kt W m+ey++
  678334627 107 IGRKRTMVFYAGRAPTGRKTPWKMNEYKA 135
                ***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-454159IPR003441NAC domain
PROSITE profilePS5100545.5236159IPR003441NAC domain
PfamPF023655.0E-227134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MSANDCPVGF RFYPNEEELL SFYLHRKIYG NCPPSIDSII PLLHIYDYDP PDLPRNHSPL  60
GGEQWFFFVP MRGKEARNGR TNRLTPQGYW KATGTQSDVN SSQHQIIGRK RTMVFYAGRA  120
PTGRKTPWKM NEYKAVETPS SLPTSQVREE LSLCRIYNRP SSGRAFQRRT LRGLEAAEYQ  180
QRVEPAVEKP SNGEPKDAEA EAENMAANGF ASWDLESIWM NLGYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-31116415173NAC domain-containing protein 19
3swm_B2e-31116415173NAC domain-containing protein 19
3swm_C2e-31116415173NAC domain-containing protein 19
3swm_D2e-31116415173NAC domain-containing protein 19
3swp_A2e-31116415173NAC domain-containing protein 19
3swp_B2e-31116415173NAC domain-containing protein 19
3swp_C2e-31116415173NAC domain-containing protein 19
3swp_D2e-31116415173NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678334627
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020553649.11e-66NAC domain-containing protein 90-like isoform X2
TrEMBLA0A2G9GF602e-64A0A2G9GF60_9LAMI; Uncharacterized protein
STRINGSolyc11g068620.1.13e-56(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24942357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.12e-56NAC domain containing protein 90