PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678334731
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ARF
Protein Properties Length: 662aa    MW: 72469 Da    PI: 7.7554
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678334731genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.32.8e-23117218199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f k+lt+sd+++ g +++p+ +ae++       + ++ +  t++ +d +g++W++++iyr++++r++lt+GW+ Fv+ + L +gD+vvF++ ++s+   +
  678334731 117 FAKTLTQSDANNGGGFSVPRFCAETIfpsldynNDPPVQ--TIVAKDVHGETWKFRHIYRGTPRRHLLTTGWSIFVNHKSLVAGDSVVFMRGENSDV--Y 212
                89*********************999****995444444..9************************************************6544555..9 PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                ++++r+
  678334731 213 LGIRRA 218
                999886 PP
2Auxin_resp1125.9e-37282365183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a+++++F+v+Y+Pra t+eF+vk+++v +al++++s+GmRfkm fetedss++++ +Gt+++v+ +dp++Wp+S+Wr+L+
   678334731 282 AATLAANGQPFDVIYYPRANTPEFCVKASQVIAALRIQWSPGMRFKMPFETEDSSRISWfMGTISSVQVADPIQWPDSPWRLLQ 365
                 68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.5E-37107220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.19E-29112218IPR015300DNA-binding pseudobarrel domain
CDDcd100172.16E-20116217No hitNo description
SMARTSM010191.9E-21117219IPR003340B3 DNA binding domain
PROSITE profilePS5086312.633117219IPR003340B3 DNA binding domain
PfamPF023622.4E-21117218IPR003340B3 DNA binding domain
PfamPF065071.7E-32282365IPR010525Auxin response factor
PROSITE profilePS5174514.569575658IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MESREASSGT DNCIDSRLWY ACAGSMVQMP SVNSSVFYFP QGHCEHALGS VDFRNSPRIP  60
ARIPCRVSGI KFMADRVTDE VFAKIRLVPV SGSEMGLDDE KSLRTSASES GDKHTSFAKT  120
LTQSDANNGG GFSVPRFCAE TIFPSLDYNN DPPVQTIVAK DVHGETWKFR HIYRGTPRRH  180
LLTTGWSIFV NHKSLVAGDS VVFMRGENSD VYLGIRRAKK GTGGGLETPT WWNSASGNSG  240
TTLCLDFSPF SGEGETELGR HGYTTENRIN RGRVKAEDVV QAATLAANGQ PFDVIYYPRA  300
NTPEFCVKAS QVIAALRIQW SPGMRFKMPF ETEDSSRISW FMGTISSVQV ADPIQWPDSP  360
WRLLQVSNLV AKSLPLLLLI SNLGRARSLA KRETGEPVVG RTGTRHSLGP PIFLISQKKT  420
QITTSRLPSW WESPLAFVFK PSGSPAQQYL WLSSYHHSWP LISFPLPCQG SNPVIPIPER  480
DENVSCLLSI GNSAQESIKS DNSKAAPAPA PFVLFGKPIL TDHQISQLCS NDSAAVSQTR  540
LSNTCNVSGS CFDLIQNKEP PPSASPSSSP LPGLDGLCKV FLESEDVGRT LDLSSVDCYA  600
DVRLRLKDLF GIQVPETPNL IIYRDAAGTV RQLGDEPFCT FVRSARRLTV LTDMSTNCSA  660
GV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-70136637368Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap678334731
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094651.10.0auxin response factor 18
RefseqXP_011094652.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2G9GAL70.0A0A2G9GAL7_9LAMI; Auxin response factor
STRINGXP_009786798.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-148auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]