PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678335418
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 290aa    MW: 31838.5 Da    PI: 6.6734
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678335418genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.77.7e-072012411055
                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                + RR+++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  678335418 201 KVRREKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 241
                67*****************98.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.12E-7182245No hitNo description
PROSITE profilePS5088812.411191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-5197246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-4201241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-12201253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-10204248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MESPANGHPY HQEPFIGSSS TSPNFCYGVV ATHSNPWTAS NQSTLSTDES SHPMATTNMN  60
SHSIDTMDLQ FAQRIKHEEL SNVYYSNFTE MLTSSLHSDD CGSSERGFLH HFPSISSPHH  120
RIGVAEATSF DMTLEALDHL GSPQIQTAIS GDGYSINHTP LSNQAQPSSF SHKVSSPKDA  180
MEQQKHKKPR VEPRSSLPAL KVRREKLGDR IAALQQLVAP FGKTDTASVL MEAIGYIKFL  240
QRQVETLSVL YMKASGPDPT KQGDDKGCEL RSRGLCLVPV SWFSCVAETS
Cis-element ? help Back to Top
SourceLink
PlantRegMap678335418
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022852971.11e-42transcription factor bHLH110-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75332227
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.13e-40bHLH family protein