PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678335645
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 228aa    MW: 25524.8 Da    PI: 7.1543
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678335645genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.0017127149123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ykC+ C+k F++   L  H  +H
  678335645 127 YKCEACNKFFRSYQALGGHKASH 149
                9***********99999888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.0018628IPR007087Zinc finger, C2H2
SMARTSM003551.2628IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.328629IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
PfamPF139121.3E-9127151IPR007087Zinc finger, C2H2
SMARTSM003550.063127149IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.33E-8127190No hitNo description
PROSITE profilePS5015710.159127154IPR007087Zinc finger, C2H2
PROSITE patternPS000280129149IPR007087Zinc finger, C2H2
PfamPF139121.0E-8168190IPR007087Zinc finger, C2H2
SMARTSM003550.052168190IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.12168197IPR007087Zinc finger, C2H2
PROSITE patternPS000280170192IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MKKAIHRCRL CFRCFENGRA LGGHMRSHTM KFYGEKREKE SSLEDSFSFS DEVESSSPEV  60
RGSVLPGPEI SPEEQMAHCL IMLSRDKWER GEFEEFDEFE HKFSDSGESS EDSGEDKIGI  120
IHAKGKYKCE ACNKFFRSYQ ALGGHKASHK KIKLAARRIV IPAEERIHQC PFCRRIFPSG  180
QALGGHKRSH FHGGATALGE ALKIDLNLPA PTEDSTVSDG ELVHAIGA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678335645
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012843926.13e-55PREDICTED: zinc finger protein ZAT1-like
TrEMBLA0A4D8ZTN02e-57A0A4D8ZTN0_SALSN; Uncharacterized protein
STRINGMigut.B01588.1.p9e-55(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-37C2H2-like zinc finger protein