PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678335712

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

M-type_MADS

Protein Properties

Length: 226aa MW: 25428.9 Da PI: 5.8304

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678335712	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	39.6	6.8e-13	10	45	2	37
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevav 37 +i++++ r t+ +R+ +lKKA+ELS+LC++++a+ 678335712 10 QIQSERERASTLKRRLDSLLKKAKELSILCGIKIAI 45 6999******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	12.741	1	47	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.2E-4	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.02E-13	3	91	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-10	11	45	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MPRKAAKHAQ IQSERERAST LKRRLDSLLK KAKELSILCG IKIAIALHNQ IDGYSMLWPS 60 EDVVMSLTEK FLSFPEREMT RKMVLQEKFL VSETEGKALQ SLKLKEKTSD KEAKLCMYQI 120 NDDGSFESLD LRQLSGLYSF AEEKLKELAK RRDELEETNR GNGMAPPNLL EQPIQGNSFT 180 ESSSNVLLNT FPAVAADNWS SSTMGGDPGE AFSGVFPQDW ATYFGH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678335712

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A022QWM1	2e-44	A0A022QWM1_ERYGU; Uncharacterized protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA378	20	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06500.1	2e-18	AGAMOUS-like 96