PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678336125
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family LBD
Protein Properties Length: 189aa    MW: 20606.4 Da    PI: 7.9943
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678336125genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.45.8e-39151151100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasn +kll ++p+++r da+ +l+yeA arardPvyG+v++i++lqqq+ +l+aela++++
  678336125  15 PCGACKFLRRKCVRSCIFAPYFDSEQgAANFAAVHKVFGASNASKLLLRIPPHRRLDAVVTLCYEALARARDPVYGCVAHIFTLQQQVINLQAELAHTQA 114
                7***********************9989********************************************************************9987 PP

     DUF260 100 e 100
                +
  678336125 115 R 115
                6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.52714116IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-3815113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MNGEAQESGG GVRGPCGACK FLRRKCVRSC IFAPYFDSEQ GAANFAAVHK VFGASNASKL  60
LLRIPPHRRL DAVVTLCYEA LARARDPVYG CVAHIFTLQQ QVINLQAELA HTQARISTMQ  120
LARHPPTMSS SGFISDQTAV YEVTSPEALT FCNNSVDQDA DVGGDLQCFA REYVSRYFPG  180
VKFLSPPSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-37111137110LOB family transfactor Ramosa2.1
5ly0_B3e-37111137110LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00313DAPTransfer from AT2G45410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678336125
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090856.21e-87LOB domain-containing protein 19
SwissprotO221328e-64LBD19_ARATH; LOB domain-containing protein 19
TrEMBLA0A4D8XZW02e-85A0A4D8XZW0_SALSN; Uncharacterized protein
STRINGcassava4.1_030486m3e-76(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.13e-66LOB domain-containing protein 19