PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678336405
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 189aa    MW: 20832 Da    PI: 4.5868
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678336405genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.5e-182373256
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                y+GVr ++ +grWv+eIr+p++   + r++lg++ tae+Aa+a++ a ++++ge
  678336405 23 YYRGVRKRS-WGRWVCEIREPKK---KSRIWLGTYSTAEMAARAHDVASRAIKGE 73
               69****888.**********854...6*********************9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.1E-322381IPR001471AP2/ERF domain
SMARTSM003803.2E-332386IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-212381IPR016177DNA-binding domain
PROSITE profilePS5103222.6422380IPR001471AP2/ERF domain
PfamPF008472.8E-122472IPR001471AP2/ERF domain
CDDcd000186.46E-302482No hitNo description
PRINTSPR003671.3E-102435IPR001471AP2/ERF domain
PRINTSPR003671.3E-104662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MSEEATTEIG KHRKEGENDG HPYYRGVRKR SWGRWVCEIR EPKKKSRIWL GTYSTAEMAA  60
RAHDVASRAI KGESAYLNFP ELAEILPRPA SSAVKDIQAA AARAATITFS EEISGGILAP  120
DPSPESEINE ETPNSTSGIL GGGISDLPDF SASDQSLEYL YCNASPWRTA SEDLEFRLEE  180
PLWWADPTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1621811273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678336405
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089857.15e-55ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ77e-43ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2G9GD185e-51A0A2G9GD18_9LAMI; Uncharacterized protein
STRINGXP_009613128.12e-47(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.12e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]