PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678336967

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

C2H2

Protein Properties

Length: 146aa MW: 15999.1 Da PI: 6.9269

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678336967	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	100	116	1	17
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 ++Cp+C k F+r nL+ 678336967 100 FSCPICFKNFNRYNNLQ 116 89************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.8E-4	100	115	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MRDAQATCFN FLPLHSSATS VVESANSFLS PHYEHAPVDL QIGLASQKPS DLGSRVSSDD 60 QAAEKDGVDI LSGLPLNNLN MGGQYWIPTP SQILIGPTQF SCPICFKNFN RYNNLQVRAF 120 PSARLSLPQV SSVVFPVQHK DKLLQL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678336967

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024628367.1	4e-27	zinc finger protein WIP2-like
Refseq	XP_024628368.1	4e-27	zinc finger protein WIP2-like
TrEMBL	A0A4D8XQ48	6e-27	A0A4D8XQ48_SALSN; Uncharacterized protein
STRING	AET02178	2e-26	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15659	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	3e-20	C2H2 family protein