PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678336970
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 352aa    MW: 40379 Da    PI: 6.1989
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678336970genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-17159205148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg WTteEd  l+++v+++G + W+ Ia+++  gR +kqc++rw+++l
        678336970 159 RGQWTTEEDRVLIQLVEKYGIRKWSHIAQMLT-GRIGKQCRERWHNHL 205
                      89*****************************9.*************97 PP
2Myb_DNA-binding60.24.4e-19211253145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++WT+eEd +l++a+++ G++ W+ Ia++++ gRt++++k++w+
        678336970 211 KDNWTEEEDRILIEAHTEVGNK-WAEIAKRLP-GRTENSIKNHWN 253
                      689*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.776154205IPR017930Myb domain
SMARTSM007176.1E-16158207IPR001005SANT/Myb domain
SuperFamilySSF466895.39E-32159252IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-28160212IPR009057Homeodomain-like
CDDcd001671.32E-14162205No hitNo description
PfamPF139211.8E-19162219No hitNo description
PROSITE profilePS5129428.644206260IPR017930Myb domain
SMARTSM007171.6E-17210258IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-23213260IPR009057Homeodomain-like
CDDcd001679.55E-14213256No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDSGDTQNGS HRHAPPPPPE LKPLEPHLAF DALSSYRQPY YLHDLYDHLP LSFTPHHWMS  60
SDIFDPFFPS PASCLEVNPC DQNRVVFQDP HELMSFASNK GCEEGLGFHD ADSMSFCIPD  120
ESSCVTADIT APRQPIEDDG RNKGFNKPAR GRKKAKSERG QWTTEEDRVL IQLVEKYGIR  180
KWSHIAQMLT GRIGKQCRER WHNHLRPDIR KDNWTEEEDR ILIEAHTEVG NKWAEIAKRL  240
PGRTENSIKN HWNATKRRQL SRRKCRTKWP RPSSLLQNYI KSLKVEKGTK TGTDPARAFQ  300
EADSGGRFAY EAEGDDHLLP GGSHDSIMDE INNMESGDDE LFDMELDFDM AL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-441592607108B-MYB
1gv2_A2e-441592604105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-441592604105C-Myb DNA-Binding Domain
1msf_C2e-441592604105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678336970
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022865113.12e-92transcription factor MYB98-like
SwissprotQ9S7L22e-77MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A022PQD73e-89A0A022PQD7_ERYGU; Uncharacterized protein
STRINGMigut.D01939.1.p5e-90(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31502349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.16e-80myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]