PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678337105
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family LFY
Protein Properties Length: 407aa    MW: 45970.8 Da    PI: 6.3012
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678337105genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY6099.3e-18613911386
    FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrld 100
                mdp+afs++lfkwdpr+   + ++rlle+ + + ap +aa  +  r+  +lee+f+ yG+ry+t+akiaelGftv+tL+dm+deel+++m+s+++ifr+d
  678337105   1 MDPDAFSTNLFKWDPRTGL-PGSNRLLESVVPMVAPPQAAYPIRPREQGGLEEFFQPYGIRYYTAAKIAELGFTVNTLLDMRDEELEEMMNSICQIFRWD 99 
                9**************9876.77789998888888887888899999999*************************************************** PP

    FLO_LFY 101 llvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskkkqkrkkkke 200
                llvGeryGikaavraerrrl+eee  ++rr+lls d+++aldalsqeglseepvq+ekeaagsg +g   +e+va+++ +++++++ + ++k+ +  ++ 
  678337105 100 LLVGERYGIKAAVRAERRRLDEEE--ARRRHLLSGDTTHALDALSQEGLSEEPVQQEKEAAGSGSGG--MWEMVAVPSGSRKQQQQLQ-RRKNYKALSRI 194
                **********************87..99999********************************9988..9999999964433333333.22222222332 PP

    FLO_LFY 201 lkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqv.f..........rya 289
                 ++e+d+d++++++  +++ + +g erqrehPfivtepgevargkknGLDYLf+LyeqCrefL+qvq++akerGekcPtkv     f          r+a
  678337105 195 GSMEDDDDDDDDTEGPDDDDNCGGYERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNLAKERGEKCPTKVSSTAqFrilaltvknpRHA 294
                2333455555555666677788899********************************************************64321322233344448** PP

    FLO_LFY 290 kkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerskas 386
                kkaga+yinkPkmrhYvhCYalhcLde++s+alrrafkergenvGawrqacykplvaiaa qgwdida+fnahprL+iWYvPtkLrqLCh+ers+a+
  678337105 295 KKAGANYINKPKMRHYVHCYALHCLDEDTSDALRRAFKERGENVGAWRQACYKPLVAIAAPQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAERSAAA 391
                *********************************************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016984.7E-1911390IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MDPDAFSTNL FKWDPRTGLP GSNRLLESVV PMVAPPQAAY PIRPREQGGL EEFFQPYGIR  60
YYTAAKIAEL GFTVNTLLDM RDEELEEMMN SICQIFRWDL LVGERYGIKA AVRAERRRLD  120
EEEARRRHLL SGDTTHALDA LSQEGLSEEP VQQEKEAAGS GSGGMWEMVA VPSGSRKQQQ  180
QLQRRKNYKA LSRIGSMEDD DDDDDDTEGP DDDDNCGGYE RQREHPFIVT EPGEVARGKK  240
NGLDYLFHLY EQCREFLIQV QNLAKERGEK CPTKVSSTAQ FRILALTVKN PRHAKKAGAN  300
YINKPKMRHY VHCYALHCLD EDTSDALRRA FKERGENVGA WRQACYKPLV AIAAPQGWDI  360
DAIFNAHPRL AIWYVPTKLR QLCHAERSAA AAAAASSITG VGHMQPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A3e-982184012174PROTEIN LEAFY
2vy2_A3e-982184012174PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for flower development. FLO may interact in a sequential manner with other homeotic genes affecting floral organ identity.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678337105
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012856831.10.0PREDICTED: floricaula protein-like
SwissprotP239150.0FLO_ANTMA; Floricaula protein
TrEMBLA0A2G9GA060.0A0A2G9GA06_9LAMI; Uncharacterized protein
TrEMBLA5A4R20.0A5A4R2_PLESU; Floricaula
STRINGMigut.I00669.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66682333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-133floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Coen ES, et al.
    floricaula: a homeotic gene required for flower development in antirrhinum majus.
    Cell, 1990. 63(6): p. 1311-22
    [PMID:1702033]