PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678337330
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 217aa    MW: 23546.1 Da    PI: 8.7165
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678337330genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.78.9e-056183123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C++ F ++  L  H++ H
  678337330 61 FSCNYCNRKFYSSQALGGHQNAH 83
               89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.41E-75888No hitNo description
Gene3DG3DSA:3.30.160.609.1E-45987IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.7186188IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEMEPQQCTD SQSSTTDSTD RPEETRNPNL VLGLRLPESQ ELSLFGTSPP PQLPPESNRV  60
FSCNYCNRKF YSSQALGGHQ NAHKRERTVA RRGERLNAAG LAPVPAARGG YGYPTFASLP  120
LHGSYNRSLG IQVHSMIHKT GYLASSSSSY TIKGYCHPNP PAAAEDHRGG RRAGTGDIRW  180
EPPAGTKGSN GMGCIKLNSS SHLSNAHQEE LDLSLKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap678337330
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082208.11e-40zinc finger protein 1
TrEMBLA0A2G9GFZ18e-40A0A2G9GFZ1_9LAMI; Uncharacterized protein
STRINGEOY293711e-35(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58272233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-31zinc-finger protein 1