PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678337921
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 242aa    MW: 27287.4 Da    PI: 4.8761
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678337921genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.61.7e-2155108356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k++++t+eq++ Le+ Fe+++++  +++ +LAkklgL+ rqV vWFqNrRa++k
  678337921  55 KKRRLTPEQVQLLEKSFEEENKLEPDRKSDLAKKLGLPPRQVAVWFQNRRARWK 108
                5678*************************************************9 PP
2HD-ZIP_I/II124.54.9e-4054145192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekkrrl+ eqv+lLE+sFeee+kLep+rK++la++Lgl prqvavWFqnrRAR+k+kqlEkd+++Lk++y +l++  e++ +e+ +L+++l 
    678337921  54 EKKRRLTPEQVQLLEKSFEEENKLEPDRKSDLAKKLGLPPRQVAVWFQNRRARWKAKQLEKDFHQLKSSYGSLVSIFESVLHENLDLKSQLL 145
                  69**************************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.6E-2049112IPR009057Homeodomain-like
PROSITE profilePS5007118.15550110IPR001356Homeobox domain
SMARTSM003895.3E-2153114IPR001356Homeobox domain
PfamPF000469.2E-1955108IPR001356Homeobox domain
CDDcd000862.28E-1955111No hitNo description
Gene3DG3DSA:1.10.10.605.5E-2256117IPR009057Homeodomain-like
PRINTSPR000313.1E-68190IPR000047Helix-turn-helix motif
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000313.1E-690106IPR000047Helix-turn-helix motif
PfamPF021831.2E-11110150IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MESWRMPFGT SSSFMGNGDL LFLGAGSLMG VEETRKRGQF MLHDEDYFDD QSPEKKRRLT  60
PEQVQLLEKS FEEENKLEPD RKSDLAKKLG LPPRQVAVWF QNRRARWKAK QLEKDFHQLK  120
SSYGSLVSIF ESVLHENLDL KSQLLSLRQM SEAKEAESDA LRKQSGESLP KEATLSAHVT  180
ARGGGAVADE DSRQPGSYIP DNHFPSCTAD VYCLNSEEDD GYRSDISTVF GSAEELGSLI  240
WS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102110RRARWKAKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678337921
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007031433.27e-70PREDICTED: homeobox-leucine zipper protein HAT5
TrEMBLA0A2G9GBN26e-73A0A2G9GBN2_9LAMI; Transcription factor HEX
STRINGEOY023591e-69(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA78912330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.19e-49homeobox 1