PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678338117
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ZF-HD
Protein Properties Length: 504aa    MW: 55674.4 Da    PI: 8.5859
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678338117genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.33.6e-3350106358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                   v+Y+eClkNhAaslGghavDGCgEfmps++++ +++++lkCa CgCHRnFHRre +
    678338117  50 VVNYRECLKNHAASLGGHAVDGCGEFMPSPNSNpAEPTSLKCAVCGCHRNFHRREAD 106
                  689*****************************99********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.5E-2851105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.6E-2952104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-2353103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.08453104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.16E-8186246IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-18190246IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-17194246IPR006455Homeodomain, ZF-HD class
HamapMF_0004026.201322504IPR002661Ribosome recycling factor
SuperFamilySSF551943.4E-65323503IPR023584Ribosome recycling factor domain
CDDcd005203.90E-85324502No hitNo description
TIGRFAMsTIGR004965.3E-66329504IPR002661Ribosome recycling factor
PfamPF017655.8E-59339502IPR023584Ribosome recycling factor domain
Gene3DG3DSA:1.10.132.208.3E-42385504IPR023584Ribosome recycling factor domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009817Biological Processdefense response to fungus, incompatible interaction
GO:0032544Biological Processplastid translation
GO:0042742Biological Processdefense response to bacterium
GO:0009570Cellular Componentchloroplast stroma
GO:0009579Cellular Componentthylakoid
GO:0003677Molecular FunctionDNA binding
GO:0005507Molecular Functioncopper ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MDLEGNSTVK TPEAENDTPT RMLPGKPSPF TNGVLKRHVQ PSPVNHHEPV VNYRECLKNH  60
AASLGGHAVD GCGEFMPSPN SNPAEPTSLK CAVCGCHRNF HRREADDLPP NDVPALEYHP  120
LHRHHPPPPQ IQPGNSSGSP MNSPSPPPIS SSYYPSVPHT LLALSHGLSA PPPENSPLAS  180
APYNAAGLFS SGSRKRFRTK FTQYQKEKML ELAEKVGWKM QKKDEDLINE SCGDMGVDKG  240
VFKVYLTSMA VALSPASYLR SVSFVSNNPP AKTRLSVLKN AAFSWSAYLN CPNFGVTARG  300
FCGNQFVGVR CATIEEIEAE KSMIEKETKD RMEKTLENLK SSFNSVRTGR SNPAILDKVE  360
VEYYGTPVLL KSIAQISTPD ASSLLVQPYD KSSLKIIEKA IVDSNLGLTP NNDGEVIRLV  420
LPQLTSDRRK EMLKLVAKHA EEGKVAVRNI RRDAIKSYDK LEKEKKLSED NVKDLSSDLQ  480
KVTDEYMKKI DSIFKQKEKE LLTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mlc_91e-10525750415271Ribosome-recycling factor, chloroplastic
Cis-element ? help Back to Top
SourceLink
PlantRegMap678338117
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011079860.11e-130ribosome-recycling factor, chloroplastic
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.14e-55homeobox protein 34