PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678338204
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 237aa    MW: 26515.4 Da    PI: 6.6913
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678338204genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.31.1e-1755107456
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                ++++  eq+++Le+ Fe  +++  e++ eLA+ lgL+ rq+ +WFqNrRa+ k
  678338204  55 KRRLDVEQVRALEKSFELGNKLEPERKMELARALGLQPRQIAIWFQNRRARSK 107
                557899*********************************************99 PP
2HD-ZIP_I/II128.72.4e-4153144192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  ekkrrl  eqv++LE+sFe  +kLeperK+elar+Lglqprq+a+WFqnrRAR ktkqlEkdy++Lkr+++alk++n++L++++++L++++ 
    678338204  53 EKKRRLDVEQVRALEKSFELGNKLEPERKMELARALGLQPRQIAIWFQNRRARSKTKQLEKDYDVLKRQFEALKADNDSLKSQNKNLQSQIL 144
                  69**************************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.6E-1936111IPR009057Homeodomain-like
PROSITE profilePS5007116.87649109IPR001356Homeobox domain
SMARTSM003894.2E-1852113IPR001356Homeobox domain
PfamPF000466.2E-1554107IPR001356Homeobox domain
CDDcd000867.40E-1654110No hitNo description
Gene3DG3DSA:1.10.10.605.5E-1957116IPR009057Homeodomain-like
PRINTSPR000312.9E-68089IPR000047Helix-turn-helix motif
PROSITE patternPS00027084107IPR017970Homeobox, conserved site
PRINTSPR000312.9E-689105IPR000047Helix-turn-helix motif
PfamPF021831.2E-15109149IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MFQGHESIPQ FPSASPSAPD FHGFLMRRSA SYSGAEVPPE DDMSDDGSQF QGEKKRRLDV  60
EQVRALEKSF ELGNKLEPER KMELARALGL QPRQIAIWFQ NRRARSKTKQ LEKDYDVLKR  120
QFEALKADND SLKSQNKNLQ SQILSLKKRE SLEGAINLNR ETEGSWSNAT ADNTGAAALL  180
FSPTMAHGGG GFTELLHGST RRNNPSTPAG SEGLCNFFGG IEENPGFWPW TDQQNFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101109RRARSKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678338204
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellic acid (GA3). {ECO:0000269|PubMed:17387478}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098601.12e-94homeobox-leucine zipper protein HOX21
SwissprotQ8LFD32e-68ATB23_ARATH; Homeobox-leucine zipper protein ATHB-23
TrEMBLA0A4D9B2378e-92A0A4D9B237_SALSN; Homeobox-leucine zipper protein
STRINGMigut.H00906.1.p3e-80(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26960.19e-71homeobox protein 23
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  3. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  4. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]