PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678338308
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 96aa    MW: 10605 Da    PI: 9.3068
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678338308genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.71.6e-0622651455
               HHHHHHHHHHHCTSCC.C...TTS-STCHH...HHHHHHHHHHHHH CS
        HLH 14 driNsafeeLrellPk.askapskKlsKae...iLekAveYIksLq 55
               d+i + +++L +llP+ +   +s++ +Ka+   +L  A++YIk+Lq
  678338308 22 DQIVDLLSKLHRLLPEmR--SNSRRSNKAAankVLGDACNYIKELQ 65
               578899**********88..47777888854449***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.445864IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-82283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-72382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MSGRRSRMST SSSSGAARIT DDQIVDLLSK LHRLLPEMRS NSRRSNKAAA NKVLGDACNY  60
IKELQKEVDD LSERLSQLLS TVDAESQEAA IIRSLI
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678338308
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004233358.11e-37transcription factor PRE6 isoform X2
RefseqXP_015065156.11e-37transcription factor PRE6
SwissprotQ9LJX11e-30PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A2G9I4F92e-38A0A2G9I4F9_9LAMI; Uncharacterized protein
STRINGSolyc02g067380.2.14e-37(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39860.13e-28bHLH family protein