PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678338506
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family AP2
Protein Properties Length: 457aa    MW: 50607.9 Da    PI: 8.5832
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678338506genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.4e-15116165155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++grW+++I+d      + k+++lg f++a +Aa+ +++a+  ++g
  678338506 116 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDSAHDAARTYDRAAIMFRG 165
                78*******************......55*********************988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.17E-14116173IPR016177DNA-binding domain
PfamPF008471.2E-7116165IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-15117173IPR001471AP2/ERF domain
CDDcd000181.09E-21117172No hitNo description
PROSITE profilePS5103216.357117173IPR001471AP2/ERF domain
SMARTSM003802.8E-28117179IPR001471AP2/ERF domain
PfamPF067473.3E-6423455IPR010625CHCH
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005747Cellular Componentmitochondrial respiratory chain complex I
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MLDLNVDATG EDDFAISAAG DELGCNASVF TLNFSVLGKD VVHIDDDVDN EGNMDDSLKG  60
ELQLFPMGPL SPSVTAQYWL NLSTGPELST HLPFSSHQVW QPQVKKSRRG PRSRSSQYRG  120
VTFYRRTGRW ESHIWDCGKQ VYLGGFDSAH DAARTYDRAA IMFRGVGADI NFSTGDYEED  180
MKQMKNFTKE EFIHLLRHKS TGFPRGNSKY RRSSSLPKHN QRRSLEQKAY EKKAIQVTSL  240
FPGNYMRVVD FSHRDEGRHR NLGSMDSCDT FKRNGEQPNF SPIKISSAGG GSSLGISMSS  300
NSSQGHGLAA AKALRFPSSA MPGNQSLQQK GGKKPICAKS FPLWECTSGR GGMADTVTSS  360
GEPAPTSSVL MAASKHIGSK CRAENIAFLK CKKDDPNPET CLDKGRLVTK CVLHLLRGLH  420
QSCGKELDAY AGCMHYHTNE FEFCRKEQKE FEKACPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lnk_Y1e-1336645420109Mitochondrial complex I, PGIV subunit
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678338506
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077024.19e-72AP2-like ethylene-responsive transcription factor TOE3 isoform X2
TrEMBLA0A2G9HWF36e-65A0A2G9HWF3_9LAMI; Uncharacterized protein
STRINGMigut.F01790.1.p4e-69(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.21e-50related to AP2.7