PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678338545
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 621aa    MW: 69934.2 Da    PI: 5.9124
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678338545genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.2e-10427473455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h   Er+RR++iNs+f +L +l+ +      +K + ++ L +++e+Ik L+
  678338545 427 NHVVSERKRREKINSRFLTLGSLIASG-----RKINRVSLLDHTIEHIKGLE 473
                68899*******************986.....7****************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.1E-4417205IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088813.922423472IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-15427489IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-14427493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-10427477No hitNo description
PfamPF000104.6E-8427473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11429478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MDAQNHDQEE VSQHLNLKKQ LALAVRNIEW SYAIFWSISP EHSGRLVWCD GYFNGEIKTR  60
KTVQTVESNA DQLGLQRSDQ LRELYESLLL GENSPPAKRP AAALVPEDLS NAEWYFLVCM  120
LFKFETGQGL PGMALAGNKP IWLQNLHLAD IKLFPRALLA EASECLDLEV QTIVCFPHLD  180
GVIELGTTEI VQEDMNLIKK VKMNFLSSSC ATVPMNPNNY TRNITTGHDS GQDGIPGDDL  240
DHLLDFQNTD VHSSNNCSDD LVDNLWREDS NLVEGEMHNL EFMDDDAICH CQNSSMNSSD  300
CISQMCEDRE MIVTEMETRG VDVTQEFNQR NSGDLKETDM HYLRVLSHLS MGSQQFILGH  360
YFKKERRKSS FVSWSKDAHR IQVPSGTAPQ KMLKKVLTDI PKLHEICKSE AAKQSCNSKQ  420
VVDENDNHVV SERKRREKIN SRFLTLGSLI ASGRKINRVS LLDHTIEHIK GLERKVEVLE  480
SQKEAMELES TTQHTQDTLE RTSDNYGSSK RKISTSMKKV CETDKTGGKK KKARFKESAA  540
GDIAVQVLDK DILIEIRCSW TNDMINEVIE TLCKIHLDIQ TFEASNAGGN LSMTLKAKCE  600
GLKAPSANAV KQALLKVISK S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A1e-123020163227Transcription factor MYC3
4ywc_A1e-123020163227Transcription factor MYC3
4ywc_B1e-123020163227Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1431436ERKRRE
2432437RKRREK
3509531KRKISTSMKKVCETDKTGGKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap678338545
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080947.10.0transcription factor EGL1 isoform X1
TrEMBLN0DQT80.0N0DQT8_9LAMI; BHLH transcription factor
STRINGMigut.E01090.1.p1e-175(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45762435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-122bHLH family protein