PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678338670
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family SRS
Protein Properties Length: 94aa    MW: 9922.88 Da    PI: 6.04
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678338670genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70238.15e-12328128153
     DUF702 128 eelaYqtavsigGhvfkGiLydqGle 153
                +++aYqt+v+i+Gh+f GiLydqG+ 
  678338670   3 DQYAYQTSVNISGHMFTGILYDQGPP 28 
                89**********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051424.2E-9327IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016241.2E-12327IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MVDQYAYQTS VNISGHMFTG ILYDQGPPEP DGPANFLTGG SSFSAPAAGL LQQPLFHSRT  60
SASGTGTTSP HYPSPSPFSA FTCISSQLFH NQNP
Cis-element ? help Back to Top
SourceLink
PlantRegMap678338670
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092834.11e-15protein SHI RELATED SEQUENCE 3-like
TrEMBLA0A4D8YQ675e-26A0A4D8YQ67_SALSN; Uncharacterized protein
STRINGMigut.B00196.1.p1e-12(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41562445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36260.14e-09Lateral root primordium (LRP) protein-related