PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678338838
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family LBD
Protein Properties Length: 176aa    MW: 19197.1 Da    PI: 4.9311
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678338838genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601322.4e-41291291101
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                +CaaCk+lrr+C++dCvlapyfp ++p kf  +h++FGasn++kll++lpe +r da+ss+vyeA+ar+rdPvyG++g i  lq+++++l+aela+++++
  678338838  29 PCAACKILRRRCTADCVLAPYFPPSEPLKFTSAHRVFGASNIIKLLQELPEANRADAVSSMVYEANARLRDPVYGCAGSICLLQKKISELEAELAVVQSQ 128
                7************************************************************************************************998 PP

     DUF260 101 l 101
                l
  678338838 129 L 129
                5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.69928129IPR004883Lateral organ boundaries, LOB
PfamPF031959.8E-4229126IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MGEMKFPVSL SPPSSSASPS SPPAIVVIPC AACKILRRRC TADCVLAPYF PPSEPLKFTS  60
AHRVFGASNI IKLLQELPEA NRADAVSSMV YEANARLRDP VYGCAGSICL LQKKISELEA  120
ELAVVQSQLL NAQSRNLELC DFISHFILPS PQEAPSSLQD DTFPDWLNGP SWELYC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-42171311113LOB family transfactor Ramosa2.1
5ly0_B3e-42171311113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678338838
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020224669.12e-62LOB domain-containing protein 1
SwissprotQ9LQR03e-54LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A151SV034e-61A0A151SV03_CAJCA; LOB domain-containing protein 11 (Fragment)
STRINGGLYMA13G40370.29e-61(Glycine max)
STRINGXP_008795252.17e-61(Phoenix dactylifera)
STRINGXP_010068859.11e-60(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.15e-54LOB domain-containing protein 1