PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678339015
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 196aa    MW: 21343.7 Da    PI: 4.6796
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678339015genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00014870123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C+ C++ F++   L  H++ H
  678339015 48 YSCSFCKREFKSAQALGGHMNAH 70
               99******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.31E-64574No hitNo description
PROSITE profilePS5015711.0534875IPR007087Zinc finger, C2H2
PfamPF139122.9E-74872IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGDAGKCSRD DNQPQSMNAA SGGEEDGEEG VFGSGVEEIS CIWPPRTYSC SFCKREFKSA  60
QALGGHMNAH RADKAKLRQS LGTPPAEIDP RPWASPASSK GIGVSSPRSI DFVMINEGNL  120
PFPQEKEKKK SMAVEFDFGS GTIRDRPMSL RSAVDGEFEA ETMGFRKRET EGKLLFSEAT  180
AYDDLDLELR LGDAPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-134370229superman protein
2l1o_A4e-134370229Transcriptional regulator SUPERMAN
Cis-element ? help Back to Top
SourceLink
PlantRegMap678339015
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21102453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.11e-19C2H2 family protein