PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678339211
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 96aa    MW: 10803.2 Da    PI: 9.4231
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678339211genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.12.4e-0628612254
               HHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH 22 eLrellPk.askapskKlsKaeiLekAveYIksL 54
               +L+ ++P+   + +s K+s a +L+++++YIk+L
  678339211 28 RLQCIVPEtHRRRTSDKVSAAKVLQETCDYIKKL 61
               7889999977799*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.223661IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-7976IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.49E-72179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MSSRRNPRSR QPAAPRISDE EILNLVTRLQ CIVPETHRRR TSDKVSAAKV LQETCDYIKK  60
LVREVGDLSE QLSQLLATTD GNSNEAAVIR SLLSRD
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678339211
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023886648.11e-31transcription factor PRE6-like
SwissprotQ9LJX11e-30PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A0L9TLK32e-29A0A0L9TLK3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R1V62e-29A0A0S3R1V6_PHAAN; Uncharacterized protein
TrEMBLB9RUP92e-29B9RUP9_RICCO; Transcription regulator, putative
STRINGXP_002517494.13e-30(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.15e-33bHLH family protein