PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678339453
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 230aa    MW: 26650.9 Da    PI: 4.8782
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678339453genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.77.4e-1758111356
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                k++++ +eq+e Le+ Fe ++ +  ++++ LAk+ gL+erqV +WFqNrRa+ k
  678339453  58 KKRRLRAEQVEFLERSFEAESRLEPQRKALLAKEAGLQERQVAIWFQNRRARCK 111
                5568999*********************************************98 PP
2HD-ZIP_I/II106.81.6e-3457147191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrl +eqv++LE+sFe+e++Lep+rK+ la+e glq rqva+WFqnrRAR k+k lE+dy++Lk ++++lk++ +++ ke+ee+r+e+
    678339453  57 EKKRRLRAEQVEFLERSFEAESRLEPQRKALLAKEAGLQERQVAIWFQNRRARCKSKLLERDYASLKLSFQKLKADYDAIVKENEEMRNEI 147
                  69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.16353113IPR001356Homeobox domain
SuperFamilySSF466898.13E-1754120IPR009057Homeodomain-like
SMARTSM003891.7E-1456117IPR001356Homeobox domain
CDDcd000867.80E-1458113No hitNo description
PfamPF000463.5E-1458111IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-1760119IPR009057Homeodomain-like
PRINTSPR000315.3E-58493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000315.3E-593109IPR000047Helix-turn-helix motif
PfamPF021834.3E-11114153IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MGGEERQQLR CVAEDVSVKR EGISLSSGLL DAICFNPQRA AEMEDDGEKL CVSIPPEKKR  60
RLRAEQVEFL ERSFEAESRL EPQRKALLAK EAGLQERQVA IWFQNRRARC KSKLLERDYA  120
SLKLSFQKLK ADYDAIVKEN EEMRNEIILL SEKRNEKGEK LKNEPSDEGE PNADSLDSDF  180
TQDLEHDDRN KHSPKLMFEW DEDVQPPLIW DSQFMIRGHG SESTTHGLRF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678339453
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002520146.13e-38homeobox-leucine zipper protein HAT5
RefseqXP_019230957.13e-38PREDICTED: homeobox-leucine zipper protein HAT5-like
SwissprotQ022835e-36HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLA0A4D9APJ04e-40A0A4D9APJ0_SALSN; Homeobox-leucine zipper protein
STRINGXP_002520146.11e-37(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8252495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-38homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]