PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678340088
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family M-type_MADS
Protein Properties Length: 252aa    MW: 28425 Da    PI: 10.7259
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678340088genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.39.8e-2993142251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                rien + rqvtfskRrng+lKKA+ELSvLCdae+ +iifs++gklye++s
  678340088  93 RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEIGLIIFSPSGKLYEFAS 142
                8***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.45584144IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-4084143IPR002100Transcription factor, MADS-box
PROSITE patternPS00350086140IPR002100Transcription factor, MADS-box
CDDcd002651.31E-4386161No hitNo description
PRINTSPR004045.2E-3086106IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.68E-3286157IPR002100Transcription factor, MADS-box
PfamPF003191.9E-2693140IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-30106121IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-30121142IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MPAAAQCFFG MRAKGSTFFA THAHELQTKA GLQEHGFCDK QAITCVLRLR YPRRVSSFTS  60
SLSLTWVFPS SLNLYRPYVS WVKMVRGKTQ LRRIENATSR QVTFSKRRNG LLKKAFELSV  120
LCDAEIGLII FSPSGKLYEF ASSSMMETID HYQKHAKSLQ SANPPPPVPP GACLEDNLQN  180
MKAEIAKLMK KIEQLEASKR LSSILCFLFR NRCGTTFHSM DVLLNVPFQQ KAARGRFRNK  240
QHSRIAADGK AS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A8e-1984161178MEF2 CHIMERA
6byy_B8e-1984161178MEF2 CHIMERA
6byy_C8e-1984161178MEF2 CHIMERA
6byy_D8e-1984161178MEF2 CHIMERA
6bz1_A8e-1984161178MEF2 CHIMERA
6bz1_B8e-1984161178MEF2 CHIMERA
6bz1_C8e-1984161178MEF2 CHIMERA
6bz1_D8e-1984161178MEF2 CHIMERA
Cis-element ? help Back to Top
SourceLink
PlantRegMap678340088
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.11e-49AGAMOUS-like 20