PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678340305

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

WOX

Protein Properties

Length: 342aa MW: 38309.1 Da PI: 8.4845

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678340305	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.4	4.2e-17	50	110	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++ +eq+++Le+ F++ +p ++e++++ +kl ++ +++V++WFqNr+ + k+ 678340305 50 KPRWNPRPEQVRILETIFNSgMVNPPRDEIRKIRAKLqeygQVGDANVFYWFQNRKSRSKH 110 89***************99***********************************995 PP
2	Wus_type_Homeobox	110.6	8.9e-36	49	112	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQ++iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++k+ 678340305 49 PKPRWNPRPEQVRILETIFNSGMVNPPRDEIRKIRAKLQEYGQVGDANVFYWFQNRKSRSKHKH 112 689**********************************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.252	46	111	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.14E-12	46	116	IPR009057	Homeodomain-like
SMART	SM00389	3.0E-8	48	115	IPR001356	Homeobox domain
CDD	cd00086	7.39E-7	49	112	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.8E-7	50	114	IPR009057	Homeodomain-like
Pfam	PF00046	1.1E-14	50	110	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MANSNRERDK HWPSMFKSKP HHQQWNHDIN SYRTVTSPCL LPDERTPEPK PRWNPRPEQV 60 RILETIFNSG MVNPPRDEIR KIRAKLQEYG QVGDANVFYW FQNRKSRSKH KHRHLQIAAA 120 KRTAAETVSD GKSKAGTFAA VQSSSSSSSD KSKDKPVPVA PAAARNSSTA SVNQAFFPEF 180 FAEPLFANMQ QGFCFSDAAA EQNIRNVPDL LTEMMAMSHK KGIGGEEGEE RMQQNLNNLQ 240 FQISSPQNQI CFPGAATTVA EEVVGPPLPK STVFINEVWF EVGSGPFNVR EAFGDDAVLI 300 HSTGQPVLTN EWGVTLQPLQ HGGFYYLLRH FPQPPLATPD LL

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MANSNRERDK HWPSMFKSKP HHQQWNHDIN SYRTVTSPCL LPDERTPEPK PRWNPRPEQV  60
RILETIFNSG MVNPPRDEIR KIRAKLQEYG QVGDANVFYW FQNRKSRSKH KHRHLQIAAA  120
KRTAAETVSD GKSKAGTFAA VQSSSSSSSD KSKDKPVPVA PAAARNSSTA SVNQAFFPEF  180
FAEPLFANMQ QGFCFSDAAA EQNIRNVPDL LTEMMAMSHK KGIGGEEGEE RMQQNLNNLQ  240
FQISSPQNQI CFPGAATTVA EEVVGPPLPK STVFINEVWF EVGSGPFNVR EAFGDDAVLI  300
HSTGQPVLTN EWGVTLQPLQ HGGFYYLLRH FPQPPLATPD LL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678340305

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086022.1	1e-105	WUSCHEL-related homeobox 8-like isoform X1
TrEMBL	A0A2G9HDL7	1e-107	A0A2G9HDL7_9LAMI; Uncharacterized protein
STRING	XP_010260387.1	3e-98	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5942	23	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	8e-54	homeobox-3