PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678341369

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

TCP

Protein Properties

Length: 333aa MW: 35218.8 Da PI: 6.6384

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678341369	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	130.1	2.1e-40	59	165	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............. 88 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt+s++a+++ + s +s+a++ +++ 678341369 59 PPKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGSIPANFStLNLSLRSTAAA-TISapssksspfspgl 157 6799****************************************************************988644444444441.1111222233455555 PP TCP 89 .......k 89 + 678341369 158 lgfhnfgQ 165 55555541 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.705	64	118	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	4.2E-36	64	166	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MNSRGQDDPP RGPFMGSITV SMDQSLNSAP HKSSSSSSSS PSIMSNTKDT GIITENKPPP 60 KKPSKDRHTK VDGRGRRIRM PALCAARVFQ LTRELGHKSD GETIEWLLQQ AEPAIIAATG 120 TGSIPANFST LNLSLRSTAA ATISAPSSKS SPFSPGLLGF HNFGQHPDDN YLKKRLREDD 180 DEASPKPNEP GSEIKSAAQS SSNFIPGHAL WAVPNIGGGN AFWMLPVTGG VTGTVEQQQD 240 WGYKTSRMGG FGFPRGGRVQ LGGSVVQQQG GWGAGEAGGA GTTTNMGMLG SINPYNSGNS 300 RIDLGMNLLD HNNQPNNSDS GGEEDEDEPK ESQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678341369

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009775051.1	2e-95	PREDICTED: transcription factor TCP23-like
Swissprot	Q9LQF0	6e-55	TCP23_ARATH; Transcription factor TCP23
TrEMBL	A0A2Z7BFH2	1e-102	A0A2Z7BFH2_9LAMI; TCP transcription factor 12
STRING	XP_009775051.1	9e-95	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	3e-50	TCP family protein