PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678341429
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 404aa    MW: 44852.1 Da    PI: 8.7394
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678341429genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.94.2e-33127184260
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d+ ++ei+Y+g Hnh+k
  678341429 127 DDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSI-DGPITEIVYKGAHNHPK 184
                8****************************************.***************85 PP
2WRKY103.98.9e-33277335159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYY+Ct++ Cpv+k+v+rs+++p++v++tYeg+Hnh+
  678341429 277 LDDGYKWRKYGQKVVKGNHNPRSYYKCTTPACPVRKHVQRSSSNPRAVITTYEGKHNHD 335
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-29117185IPR003657WRKY domain
PROSITE profilePS5081124.57121185IPR003657WRKY domain
SuperFamilySSF1182906.67E-26122185IPR003657WRKY domain
SMARTSM007743.7E-36126184IPR003657WRKY domain
PfamPF031061.4E-25127183IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.6E-36262337IPR003657WRKY domain
SuperFamilySSF1182907.98E-29269337IPR003657WRKY domain
PROSITE profilePS5081135.542272337IPR003657WRKY domain
SMARTSM007741.5E-37277336IPR003657WRKY domain
PfamPF031063.1E-25278335IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MSSFGFRDRV SGIELPKFRS LPPPSLPIAP PRTVSPSPWF SIPPGLSPGE LLESPILLPA  60
SHALRSPTTG NVAKFFSCSD RTSELPKQQN DAKNQNVSFS FPTQAKFQTS CGQEQHAVKP  120
SNKKMEDDGY NWRKYGQKQV KGSENPRSYY KCTFPNCPTK KKVERSIDGP ITEIVYKGAH  180
NHPKPPSTRR SSASSTSIPS HFPEFPETSS SVVTTENAYS SPDRDFEQSR DEFDDLQEPE  240
AKRRKGEVEA EGILSTGSDP VREPRVVVQT TSDLDILDDG YKWRKYGQKV VKGNHNPRSY  300
YKCTTPACPV RKHVQRSSSN PRAVITTYEG KHNHDVPVGR GGAAYSMSAE PTHCPQVQSF  360
PRYHGSSLAQ APHTLEMIPS FGCRQGVPKP EPGEEDDFIN SLLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-35125337877Probable WRKY transcription factor 4
2lex_A4e-35125337877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678341429
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020271607.11e-120WRKY transcription factor WRKY24
SwissprotQ6B6R45e-95WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2G9HPT91e-116A0A2G9HPT9_9LAMI; Uncharacterized protein
STRINGGLYMA11G29720.11e-110(Glycine max)
STRINGTraes_1BS_EF67E5A24.11e-110(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.13e-90WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]