PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678341994
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 196aa    MW: 22482.8 Da    PI: 9.0124
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678341994genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.7e-132367554
               HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH  5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
               + ++ErrRR++iN+++ eLr+l+P+ +       ++Ka+i + A+eYI +L
  678341994 23 NLKAERRRRKKINDRLYELRSLVPNiS------NMNKAAIFTDAIEYIEKL 67
               5689*********************66......7**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.41E-181582IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-121672No hitNo description
PROSITE profilePS5088815.6631867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-102267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-182383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-142473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MNLRRGNGSD SDAENDGKFK SKNLKAERRR RKKINDRLYE LRSLVPNISN MNKAAIFTDA  60
IEYIEKLKQT VEELSSQLSE MEETKVRIFE EVENDFKYQQ EMRKWGIQPE VEVKPMGGGK  120
LWIKIVFLMR RGGITRLMEA VEVMGFGVTE ASITASRGAF LVCLAAEESH GGVLDHNPDQ  180
VRKFLWEVIS LKKAQD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678341994
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012848643.13e-53PREDICTED: transcription factor DYT1-like
TrEMBLA0A2G9GB993e-55A0A2G9GB99_9LAMI; Uncharacterized protein
STRINGMigut.M01250.1.p1e-52(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91071622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.11e-29bHLH family protein