PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678342189
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family CO-like
Protein Properties Length: 380aa    MW: 42702.5 Da    PI: 5.9369
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678342189genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.77.5e-06444539
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                C+ ++e++   +C+++   lC +C  + H+       H++
  678342189  4 LCDFCKEQRSLVYCRSDAARLCLSCDRHVHSAnglsmrHSR 44
               7*****************************65677777766 PP
2zf-B_box18.73.5e-064689439
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg........Htv 39
                 C++++++++   C +++  lC++C    H++        Ht+
  678342189 46 LLCEKCQSQPAVVRCIEDKLSLCQNCNWDVHSStdvaehkrHTI 89
               57************************887775566666222555 PP
3CCT65.41.6e-22323366144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                R+ allRYkeK+k RkF+KkirY+sRK++A+ R+RvKGrFvk+ 
  678342189 323 RDDALLRYKEKKKLRKFDKKIRYASRKVRADIRKRVKGRFVKSG 366
                899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.712147IPR000315B-box-type zinc finger
SMARTSM003364.2E-8147IPR000315B-box-type zinc finger
CDDcd000216.39E-6447No hitNo description
PROSITE profilePS501199.3284389IPR000315B-box-type zinc finger
PfamPF006437.1E-64689IPR000315B-box-type zinc finger
CDDcd000212.35E-44777No hitNo description
PfamPF062035.0E-17323365IPR010402CCT domain
PROSITE profilePS5101715.2323365IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MGKLCDFCKE QRSLVYCRSD AARLCLSCDR HVHSANGLSM RHSRTLLCEK CQSQPAVVRC  60
IEDKLSLCQN CNWDVHSSTD VAEHKRHTIN CYSGCPSSAE FSNIWSFFSV DRDHSRLDPG  120
QEDDIPALCQ SHSDDYDKKN AAMGAVASDT GQRCGRKDSS SSKAYSSSTK HSGSVYDSLY  180
DELDFPDVDL SLDDCEGFLD DPLPYSETSE LGSLPEFGNF NDIEESLEKL NPMKLQDDSI  240
SNNETMFWSC NNITLSTDSI SCCKSDSRSP FEAPSQSAIS RSFSGPVPEL VLADHHENVW  300
PYMDVATKGT PLPSNQTPSS ACRDDALLRY KEKKKLRKFD KKIRYASRKV RADIRKRVKG  360
RFVKSGDPYD YDPLHLILNQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap678342189
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095879.11e-101zinc finger protein CONSTANS-LIKE 10 isoform X1
TrEMBLA0A2G9G4381e-112A0A2G9G438_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12702468
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-63B-box type zinc finger protein with CCT domain