PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678342586
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 511aa    MW: 54882.8 Da    PI: 9.2466
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678342586genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-055274123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C+k F r  nL+ H r H
  678342586 52 FVCEICNKGFQRDQNLQLHRRGH 74
               89*******************88 PP
2zf-C2H217.21.4e-05128150123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+C+ C+k +  +s+ k H++t+
  678342586 128 YRCERCTKKYAVQSDWKAHMKTC 150
                9********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.68E-75174No hitNo description
Gene3DG3DSA:3.30.160.601.7E-55174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121718.2E-55274IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9495274IPR007087Zinc finger, C2H2
SMARTSM003550.0175274IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
SMARTSM0035521093123IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.0E-5116149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.68E-7123149No hitNo description
SMARTSM0035554128148IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MAGMDIAQLG SASDQELPKE KEIPPLKKKR NLPGMPEVIA LSPKTLLSTN RFVCEICNKG  60
FQRDQNLQLH RRGHNLPWKL RKRAGKEVKK RVYVCPEPTC LHHEPSRALG DLTGIKKHFC  120
RKHGEKTYRC ERCTKKYAVQ SDWKAHMKTC GTRDYRCACG SSYSRRDSFV THRAFCEALA  180
QEKNRAKPQP APKSGEDKKN VDPSPPPSSR PPTSSTPSSP ATPSTGVLSP IGGQMPENLG  240
ILNTPPQRPQ PTTVSSTSVI PEPTHETIGP TTTTATANSS GNHHLFPGVT GIFTNNFAAS  300
TTTTQLPQYS NILCSMDTSD IPNVEIETLS LSSSSSLYGR APSVFSVSSQ NPPHYQPNSE  360
PALSATVLLQ KAAQMGSTSS SSSFLRGLGL ELPFPANSKD NASSLQSSCW NSGGKVESNL  420
MHYGPGLGIQ PNPSTGLSEL IMNPLGLFSN EPTTVDFLGL GLVPGGDAAP SSVGYSAYFG  480
SIGAGIGVRE RDFSGVDTAE GSPTGRFDRK K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-27124185364Zinc finger protein JACKDAW
5b3h_F3e-27124185364Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678342586
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074522.11e-147protein indeterminate-domain 2
TrEMBLA0A2Z7AM571e-148A0A2Z7AM57_9LAMI; Zinc finger protein JACKDAW-like
STRINGVIT_18s0001g12220.t011e-142(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.14e-96indeterminate(ID)-domain 2