PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678342711
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 159aa    MW: 17811.8 Da    PI: 9.1128
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678342711genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.9e-183180255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                y+G+r +k +g+WvAeIr+p   +kr+r++lg++ t+  Aa+a++ a  +l+g
  678342711 31 PYRGIRMRK-WGKWVAEIREP---NKRTRIWLGSYSTPIAAARAYDTALFYLRG 80
               69*****99.**********9...337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-353194IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-213189IPR016177DNA-binding domain
PROSITE profilePS5103222.1813188IPR001471AP2/ERF domain
PfamPF008477.3E-123280IPR001471AP2/ERF domain
PRINTSPR003671.4E-113243IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-303289IPR001471AP2/ERF domain
CDDcd000185.37E-273289No hitNo description
PRINTSPR003671.4E-117090IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
METACCTSSS ASSSSSEISK RKRREHQLDK PYRGIRMRKW GKWVAEIREP NKRTRIWLGS  60
YSTPIAAARA YDTALFYLRG PNARLNFPEF ILNDDRADQP PHDLSAAAIR KKATEIGAMV  120
DALHSSSSSS VSRTANPPRV QPDLNEYPSP ENSEGEEDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-153088463ATERF1
3gcc_A6e-153088463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678342711
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011074400.11e-72ethylene-responsive transcription factor ERF008-like
SwissprotO221744e-50ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A4D8Y1151e-69A0A4D8Y115_SALSN; EREBP-like factor
STRINGXP_009796242.19e-66(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.16e-51DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]