PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678343627

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

WRKY

Protein Properties

Length: 260aa MW: 29166.7 Da PI: 6.1085

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678343627	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.7	1.3e-29	92	149	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers +d +++ +tY+ eHnh+ 678343627 92 DSWSWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSLHDATALMVTYSCEHNHP 149 99**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-31	82	151	IPR003657	WRKY domain
SuperFamily	SSF118290	3.92E-26	84	151	IPR003657	WRKY domain
PROSITE profile	PS50811	31.8	85	151	IPR003657	WRKY domain
SMART	SM00774	2.1E-34	90	150	IPR003657	WRKY domain
Pfam	PF03106	9.0E-25	92	149	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MEGGVDRGHE EEDSPTLTTT PEDAADSALP DDERIHAPAV KKRSGFLTAR FAFGINEHYF 60 SDRRRGREKR VVTVRMDVDG LRSKTEVHPP PDSWSWRKYG QKPIKGSPYP RGYYRCSSSK 120 GCPARKQVER SLHDATALMV TYSCEHNHPL PSVIVKPHRL SRAPSPSFPE SASSLIQAER 180 DTAAAEDGFA EFLGEFGWVC EVESTMMTET TFVGPSWVNA GMEMFMPIGE EDKLLFGDLG 240 DLPEYSIVFR RCVKETAFSR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-19	92	151	16	74	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678343627

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083309.1	2e-92	probable WRKY transcription factor 69
Swissprot	Q93WV5	8e-51	WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBL	A0A2G9HZX0	6e-88	A0A2G9HZX0_9LAMI; Uncharacterized protein
STRING	Migut.M00241.1.p	2e-85	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7468	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58710.2	4e-53	WRKY DNA-binding protein 69

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]