PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678343827
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HD-ZIP
Protein Properties Length: 226aa    MW: 26009.6 Da    PI: 7.2515
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678343827genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81e-1967119456
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                + +++++qle Le+ F+++ +++ +++ +LAk lgL+ rq+ vWFqNrRa++k
  678343827  67 KKRLSSDQLESLENSFQEEIKLDPDRKMKLAKDLGLQPRQIAVWFQNRRARWK 119
                55699***********************************************9 PP
2HD-ZIP_I/II118.73.1e-3866156292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  kk+rls++q+++LE+sF+ee kL+p+rK++la++Lglqprq+avWFqnrRAR+k+kqlE+ y+aLk+++d +++e+++L++ev +Lr+ l+
    678343827  66 KKKRLSSDQLESLENSFQEEIKLDPDRKMKLAKDLGLQPRQIAVWFQNRRARWKAKQLENLYDALKQELDVVSREKQKLQQEVMALRAILR 156
                  9*************************************************************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-1949123IPR009057Homeodomain-like
PROSITE profilePS5007116.94161121IPR001356Homeobox domain
SMARTSM003891.5E-1764125IPR001356Homeobox domain
CDDcd000862.51E-1666122No hitNo description
PfamPF000464.8E-1767119IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.1E-2168128IPR009057Homeodomain-like
PRINTSPR000311.2E-592101IPR000047Helix-turn-helix motif
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PRINTSPR000311.2E-5101117IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDWNNESLRL PSSFASRPEG SFSFLYNYTY DQFPGLEMKE PAISAGQMPP TLMGKNCINI  60
YGQDMKKKRL SSDQLESLEN SFQEEIKLDP DRKMKLAKDL GLQPRQIAVW FQNRRARWKA  120
KQLENLYDAL KQELDVVSRE KQKLQQEVMA LRAILRDHVG RKQISPGYTD VSGEETVEST  180
SIPSSDVAYQ CNYVMNVGEE YADPVMMRTY NNTWGALPLP IQRPGK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121RRARWKAKQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678343827
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094442.13e-93putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR02e-53ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLS8CB321e-105S8CB32_9LAMI; Uncharacterized protein
STRINGMigut.J00491.1.p3e-87(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38692246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.11e-55homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]