PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678343883
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Trihelix
Protein Properties Length: 503aa    MW: 57461.6 Da    PI: 6.6087
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678343883genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.34.3e-23141250186
   trihelix   1 rWtkqevlaLiearremeerlrrgk.......................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsess 76 
                +Wt+++v++Li ++ ++++++ ++                        + k++W++vsk+m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++
  678343883 141 KWTDNMVRLLIMVVYYVGDEVPASDhgsnnndtkkkggsgsasgalqkKGKGKWKSVSKAMMEKGFFVSPQQCEDKFNDLNKRYKRVNDILGKGtSCRVV 240
                7**************8888888765555667777788888888888767799******************************************669*** PP

   trihelix  77 stcpyfdqle 86 
                ++ +++d+++
  678343883 241 ENPALLDKMD 250
                *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.7E-20139276No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MGHKSGFGFF PILSAAFKQS VHPSLSSISF LVVLVSEVWL HMESDAAIAI AMAADMYHHP  60
PPPDVQPNTS CSNMLPLEMS LNRNPNQLDY HHQLLPQQKI QHVLTPHSDD DDPATQIPMG  120
GPENDDDPDG RRKISPWHRM KWTDNMVRLL IMVVYYVGDE VPASDHGSNN NDTKKKGGSG  180
SASGALQKKG KGKWKSVSKA MMEKGFFVSP QQCEDKFNDL NKRYKRVNDI LGKGTSCRVV  240
ENPALLDKMD HLSPKMKDEV KKLLSSKHLF FKEMCAYHNT CGHAVANGVA SHQELDHHLP  300
EKPCLHSNDV VLVPNLNKPE NEASKLAEAA AAAAVEDENE HEADNEDDEE EEYEIDAEED  360
EEIRRSRKRS KKGEHSSSGV VQQLEADIIN ILQDASKSHT EKREWMKGRM AGLEEQRMSI  420
AAQSFELEKQ RFKWLKFSSK KEREMEREKV MNERLNLENE RMMLILRHKE LDLIHHQLQV  480
QQQMRHHHHY HHHHNSNSHT SEQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1363369RRSRKRS
2363371RRSRKRSKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap678343883
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101476.11e-136uncharacterized protein LOC105179522
TrEMBLA0A2Z7B9K11e-124A0A2Z7B9K1_9LAMI; Uncharacterized protein
STRINGVIT_08s0007g04180.t011e-125(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67102231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-53sequence-specific DNA binding transcription factors