PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678345199
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 271aa    MW: 28565.4 Da    PI: 9.0167
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678345199genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.67.8e-0776101227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                kt+ C+ f     Ck+Gd+C+FaH++
  678345199  76 KTRMCNKFGTPEGCKFGDKCHFAHSE 101
                7888887777779***********95 PP
2zf-CCCH35.91.3e-11238262126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt+lC +fa+ G C +G+rC+FaHg
  678345199 238 FKTKLCENFAK-GSCTFGERCHFAHG 262
                69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7936IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.042937IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-61035IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-71134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-1472104IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-872105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.78474102IPR000571Zinc finger, CCCH-type
SMARTSM003560.08174101IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.46E-14134215IPR004088K Homology domain, type 1
SMARTSM003223.3E-11144214IPR004087K Homology domain
PROSITE profilePS5008413.816145209IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.4E-14145214IPR004088K Homology domain, type 1
PfamPF000132.0E-9147211IPR004088K Homology domain, type 1
CDDcd001051.98E-10149209No hitNo description
Gene3DG3DSA:4.10.1000.101.7E-15236267IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.718237264IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-7237263IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-8237267IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-9238262IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MESFTTGIGS KSKPCTKFFS TSGCPFGEGC HFLHYVPGGL KAVIQILGTN PALPAAGRNP  60
AGPPSFPDIA SPPLVKTRMC NKFGTPEGCK FGDKCHFAHS ERELGKATVP FHDSGRPFGH  120
PGRLAGGHME ATLPNYGAAA SFGASATAKI NIDASMAGAV IGKDGIHSKN ISRMTGARLS  180
VRDHETDPNL RNIELEGSFD QIKQATQMVR ELIASLGAFS AGGARHSAMS SHGVGSNFKT  240
KLCENFAKGS CTFGERCHFA HGAEELRRFG V
Cis-element ? help Back to Top
SourceLink
PlantRegMap678345199
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083138.11e-136zinc finger CCCH domain-containing protein 44-like
SwissprotQ7F8R01e-101C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2G9HN761e-137A0A2G9HN76_9LAMI; Uncharacterized protein
STRINGcassava4.1_012715m1e-128(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-50C3H family protein