PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678345503
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 333aa    MW: 37386.7 Da    PI: 6.6825
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678345503genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1053.9e-33169227159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK vk+s+fprsYYrCts++C vkk+vers+ed ++v++tYeg+H+h+
  678345503 169 LDDGYRWRKYGQKGVKNSPFPRSYYRCTSTSCGVKKRVERSSEDRSIVITTYEGTHTHP 227
                59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-34154229IPR003657WRKY domain
SuperFamilySSF1182904.58E-29161229IPR003657WRKY domain
PROSITE profilePS5081131.295164229IPR003657WRKY domain
SMARTSM007741.4E-37169228IPR003657WRKY domain
PfamPF031066.7E-27170227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDEKRKENSD EFSSELDQIQ MMMMIPEASS FSMAEEGSFY GDRDTKGSLG FLDMLSSHDF  60
ASSHSTFDDL LQNVTTHMIL PEPPPQLPVS AATEYSEVFN APATPNSSNS ASSSTNEGVG  120
EGDRKTRNTG DEDESQDKIK KLLGVKKKNQ KRQREPRFAF MTKSEVDHLD DGYRWRKYGQ  180
KGVKNSPFPR SYYRCTSTSC GVKKRVERSS EDRSIVITTY EGTHTHPCPI MPRGAFGLLS  240
ESAAFSASRI GEGAYPSSQL VMPQTHHIQQ QMKNATQQRV PPYIPTLNPQ LSFSDRNPAF  300
HERPFRPPAS SMERDHGLLE DMLPSKIMKD PSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-251622291077Probable WRKY transcription factor 4
2lex_A2e-251622291077Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678345503
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100744.26e-88probable WRKY transcription factor 48, partial
TrEMBLA0A2G9I0G12e-89A0A2G9I0G1_9LAMI; Uncharacterized protein
STRINGVIT_05s0077g00730.t015e-77(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13092479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.13e-48WRKY DNA-binding protein 48